Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq11797 502 3e-137 seq17927 385 6e-102 seq14352 123 3e-23 >seq11797 Length=28381 Score = 502 bits (556), Expect = 3e-137 Identities = 704/985 (71%), Gaps = 2/985 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | ||| ||||| ||| | ||| | |||| |||| ||||| ||||| | Sbjct 1400 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1341 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || | ||||| ||||| || ||| Sbjct 1340 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCCT 1281 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAA 171998 || || ||||| || || || | ||||| ||| | || ||| ||||| || || ||||| Sbjct 1280 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACAA 1222 Query 171999 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTAT 172058 || || || |||||| || |||| | || || || ||| | || || ||||| || Sbjct 1221 TATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAAT 1162 Query 172059 CTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAAT 172118 |||||||| ||| |||| ||||||||| | ||||| |||||||||||| | | | | Sbjct 1161 TTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 1102 Query 172119 CTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAG 172178 | ||||| | | ||| | | || ||||| | |||||||||| | | | Sbjct 1101 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1042 Query 172179 ATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGC 172238 || |||||| | || ||||| ||| ||||||||||| ||||| |||| || ||| Sbjct 1041 TTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 982 Query 172239 TGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 172298 || ||| | | ||||| | ||||| || || |||||||||||||| ||||| || Sbjct 981 AGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 922 Query 172299 CTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCC 172358 ||| ||||| |||||||| ||| | || ||||| || |||||||||||||| ||||| || Sbjct 921 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCC 862 Query 172359 TTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGG 172418 || |||||| ||| ||||| || | || || || || |||| || ||||| || Sbjct 861 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 802 Query 172419 TTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGG 172478 |||||| || || ||| | | ||||| || || || ||| ||||| || | || Sbjct 801 TTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 742 Query 172479 ATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGG 172538 |||| ||||| |||||||||||||| |||||||| ||||| || || ||||| ||||| Sbjct 741 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 682 Query 172539 TCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 172598 || | |||||||| |||||| ||||||||| || | | | || |||||| |||| Sbjct 681 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 622 Query 172599 AGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 172658 | || || || ||| || | ||||| || || | ||||| |||| |||||||| || Sbjct 621 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTAA 562 Query 172659 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTAC 172718 | | || || ||||| ||||||||||| || || ||| | | || || || ||| Sbjct 561 CTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 502 Query 172719 ATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGC 172778 |||| ||| || ||||| | || ||||| ||||||||||||||||||||| | ||||| Sbjct 501 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 442 Query 172779 ACACAACTTCCCATTAGACCTTGCT 172803 ||||||||||| ||||||| ||| Sbjct 441 TCACAACTTCCCTCTAGACCTAGCT 417 >seq17927 Length=56337 Score = 385 bits (426), Expect = 6e-102 Identities = 706/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || || ||||| || | || ||||||||| Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || || || | || ||||||||| ||| || ||||| Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| || |||||| Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 4183 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 || || || || || || |||| | | | ||| | |||| || ||||| Sbjct 4184 ACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGT 4243 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 |||||||||||||| || ||||||| ||| | || || || |||| ||||| Sbjct 4244 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 4303 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 || | || || | || | | | |||||||| ||| | ||||| ||||| | || || Sbjct 4304 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 4363 Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370 ||| | ||||||| || ||| |||||||||||| | || || || || | Sbjct 4364 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 4423 Query 173371 AGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGT 173430 |||| |||| || |||||||| || |||||||||| || ||| || ||| Sbjct 4424 TCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 4483 Query 173431 GTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 173490 || || || || ||||| | |||| | || | ||||| || || || |||||||| Sbjct 4484 GTAGCGGCTATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 4543 Query 173491 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCAT 173550 |||||||| |||||||| || || || |||| || | || | ||||| || |||||| Sbjct 4544 CCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCAT 4603 Query 173551 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATT 173610 ||||| || || | || || || | |||||| | ||| ||| | | Sbjct 4604 GGTGCTACTGTAGAAAATACTTTATTTGAAGA------------TGGTGATGGTGCAAAT 4651 Query 173611 CAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 173670 || ||| | || ||| | || || || | |||||||||||| ||| | Sbjct 4652 ---------ACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTC 4702 Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || || ||| | || |||||||| || ||||| | || ||||| || ||| | | ||| Sbjct 4703 ACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 4762 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 || ||| | ||||| || ||||| || | ||| | |||| | | || | || Sbjct 4763 CATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 4822 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850 ||||| || | ||||| | || || |||||||| || || || || | ||||| ||| Sbjct 4823 GGTCTAGCTTTGAACCTACGCGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAA 4882 Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910 ||||| || || ||||||||||||||||| ||||| ||| | || |||||||| | || Sbjct 4883 GATCCGGAATTTGAGACTTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 4942 Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCA 173970 |||||| | || |||||| || ||||| ||| | |||| || || || || ||||| Sbjct 4943 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 5002 Query 173971 AGAGGTAACGCACTTTAA 173988 | || ||||| |||||| Sbjct 5003 CGTGGAAACGCTCTTTAA 5020 >seq14352 Length=826827 Score = 123 bits (136), Expect = 3e-23 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 157926 GCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGAT 157985 ||| ||| || | ||||||||| |||||| || || ||||| |||||||||||||| Sbjct 398334 GCGTAACATTATGGAGAATCCTGCTTGGTATACTCAGTATACTCCTTATCAAGCTGAGAT 398393 Query 157986 ATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGG 158045 |||||||| || | ||| | | |||||| ||| ||| | || || || || ||||| Sbjct 398394 CTCTCAGGGGAGGCTTGAATCGCTTCTCAATTTCCAGACGGTGATAACGGATCTTACAGG 398453 Query 158046 ACTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 ||| || || ||||||| || | | ||||||| |||||||| |||||||||||| Sbjct 398454 ACTTCCTATGTCAAACGCCTCGTTGCTTGATGAAGGGACTGCAGCTGCAGAAGCAATG 398511 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/97 (79%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || ||||| || | || ||||| |||||||| || || |||||||| Sbjct 400893 TGGAGCAGATGTTTGCCATCTTAATCTCCACAAGACCTTCTGTATCCCTCACGGAGGTGG 400952 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT--AGCAAAAC 159787 |||||||| | || ||||||||||| ||||| || Sbjct 400953 TGGTCCTGGTATGGGCCCTATTGGTGTGAAGCAACAC 400989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587916595080320