Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 502 3e-137
seq17927 385 6e-102
seq14352 123 3e-23
>seq11797
Length=28381
Score = 502 bits (556), Expect = 3e-137
Identities = 704/985 (71%), Gaps = 2/985 (0%)
Strand=Plus/Minus
Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879
||||| | ||| ||||| ||| | ||| | |||| |||| ||||| ||||| |
Sbjct 1400 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1341
Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939
|||||||| || | || ||| | | || || | ||||| ||||| || |||
Sbjct 1340 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCCT 1281
Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAA 171998
|| || ||||| || || || | ||||| ||| | || ||| ||||| || || |||||
Sbjct 1280 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACAA 1222
Query 171999 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTAT 172058
|| || || |||||| || |||| | || || || ||| | || || ||||| ||
Sbjct 1221 TATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAAT 1162
Query 172059 CTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAAT 172118
|||||||| ||| |||| ||||||||| | ||||| |||||||||||| | | | |
Sbjct 1161 TTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 1102
Query 172119 CTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAG 172178
| ||||| | | ||| | | || ||||| | |||||||||| | | |
Sbjct 1101 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1042
Query 172179 ATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGC 172238
|| |||||| | || ||||| ||| ||||||||||| ||||| |||| || |||
Sbjct 1041 TTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 982
Query 172239 TGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 172298
|| ||| | | ||||| | ||||| || || |||||||||||||| ||||| ||
Sbjct 981 AGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 922
Query 172299 CTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCC 172358
||| ||||| |||||||| ||| | || ||||| || |||||||||||||| ||||| ||
Sbjct 921 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCC 862
Query 172359 TTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGG 172418
|| |||||| ||| ||||| || | || || || || |||| || ||||| ||
Sbjct 861 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 802
Query 172419 TTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGG 172478
|||||| || || ||| | | ||||| || || || ||| ||||| || | ||
Sbjct 801 TTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 742
Query 172479 ATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGG 172538
|||| ||||| |||||||||||||| |||||||| ||||| || || ||||| |||||
Sbjct 741 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 682
Query 172539 TCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 172598
|| | |||||||| |||||| ||||||||| || | | | || |||||| ||||
Sbjct 681 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 622
Query 172599 AGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 172658
| || || || ||| || | ||||| || || | ||||| |||| |||||||| ||
Sbjct 621 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTAA 562
Query 172659 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTAC 172718
| | || || ||||| ||||||||||| || || ||| | | || || || |||
Sbjct 561 CTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 502
Query 172719 ATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGC 172778
|||| ||| || ||||| | || ||||| ||||||||||||||||||||| | |||||
Sbjct 501 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 442
Query 172779 ACACAACTTCCCATTAGACCTTGCT 172803
||||||||||| ||||||| |||
Sbjct 441 TCACAACTTCCCTCTAGACCTAGCT 417
>seq17927
Length=56337
Score = 385 bits (426), Expect = 6e-102
Identities = 706/1038 (68%), Gaps = 21/1038 (2%)
Strand=Plus/Plus
Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010
|||||| || | || ||||||||| ||| || || ||||| || | || |||||||||
Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063
Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070
|| || || | |||||||| || || || | || ||||||||| ||| || |||||
Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123
Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130
|| || ||||||||||| ||||| | || ||| ||| | ||||| || ||||||
Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 4183
Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190
|| || || || || || |||| | | | ||| | |||| || |||||
Sbjct 4184 ACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGT 4243
Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250
|||||||||||||| || ||||||| ||| | || || || |||| |||||
Sbjct 4244 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 4303
Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310
|| | || || | || | | | |||||||| ||| | ||||| ||||| | || ||
Sbjct 4304 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 4363
Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370
||| | ||||||| || ||| |||||||||||| | || || || || |
Sbjct 4364 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 4423
Query 173371 AGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGT 173430
|||| |||| || |||||||| || |||||||||| || ||| || |||
Sbjct 4424 TCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 4483
Query 173431 GTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 173490
|| || || || ||||| | |||| | || | ||||| || || || ||||||||
Sbjct 4484 GTAGCGGCTATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 4543
Query 173491 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCAT 173550
|||||||| |||||||| || || || |||| || | || | ||||| || ||||||
Sbjct 4544 CCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCAT 4603
Query 173551 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATT 173610
||||| || || | || || || | |||||| | ||| ||| | |
Sbjct 4604 GGTGCTACTGTAGAAAATACTTTATTTGAAGA------------TGGTGATGGTGCAAAT 4651
Query 173611 CAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 173670
|| ||| | || ||| | || || || | |||||||||||| ||| |
Sbjct 4652 ---------ACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTC 4702
Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730
|| || ||| | || |||||||| || ||||| | || ||||| || ||| | | |||
Sbjct 4703 ACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 4762
Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790
|| ||| | ||||| || ||||| || | ||| | |||| | | || | ||
Sbjct 4763 CATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 4822
Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850
||||| || | ||||| | || || |||||||| || || || || | ||||| |||
Sbjct 4823 GGTCTAGCTTTGAACCTACGCGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAA 4882
Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910
||||| || || ||||||||||||||||| ||||| ||| | || |||||||| | ||
Sbjct 4883 GATCCGGAATTTGAGACTTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 4942
Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCA 173970
|||||| | || |||||| || ||||| ||| | |||| || || || || |||||
Sbjct 4943 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 5002
Query 173971 AGAGGTAACGCACTTTAA 173988
| || ||||| ||||||
Sbjct 5003 CGTGGAAACGCTCTTTAA 5020
>seq14352
Length=826827
Score = 123 bits (136), Expect = 3e-23
Identities = 134/178 (75%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 157926 GCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGAT 157985
||| ||| || | ||||||||| |||||| || || ||||| ||||||||||||||
Sbjct 398334 GCGTAACATTATGGAGAATCCTGCTTGGTATACTCAGTATACTCCTTATCAAGCTGAGAT 398393
Query 157986 ATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGG 158045
|||||||| || | ||| | | |||||| ||| ||| | || || || || |||||
Sbjct 398394 CTCTCAGGGGAGGCTTGAATCGCTTCTCAATTTCCAGACGGTGATAACGGATCTTACAGG 398453
Query 158046 ACTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103
||| || || ||||||| || | | ||||||| |||||||| ||||||||||||
Sbjct 398454 ACTTCCTATGTCAAACGCCTCGTTGCTTGATGAAGGGACTGCAGCTGCAGAAGCAATG 398511
Score = 82.4 bits (90), Expect = 9e-11
Identities = 77/97 (79%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752
||| |||||||| || ||||| || | || ||||| |||||||| || || ||||||||
Sbjct 400893 TGGAGCAGATGTTTGCCATCTTAATCTCCACAAGACCTTCTGTATCCCTCACGGAGGTGG 400952
Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT--AGCAAAAC 159787
|||||||| | || ||||||||||| ||||| ||
Sbjct 400953 TGGTCCTGGTATGGGCCCTATTGGTGTGAAGCAACAC 400989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587916595080320
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