Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_015285.1
Length=174285
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 560 1e-154
seq17927 504 8e-138
>seq11797
Length=28381
Score = 560 bits (620), Expect = 1e-154
Identities = 700/957 (73%), Gaps = 2/957 (0%)
Strand=Plus/Minus
Query 162412 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 162471
||||| || || | || ||||| || || ||||||| || || | ||| | |||||
Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1314
Query 162472 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 162531
| ||| || |||| || | |||||||| || || || || || || || ||||||
Sbjct 1313 TCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1254
Query 162532 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 162591
|| || |||| || || | || || ||||| || || || |||||| || |||| ||
Sbjct 1253 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTACT 1194
Query 162592 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 162651
|| || || ||| | || || || || || |||||||| ||||| ||||||| |||
Sbjct 1193 TCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGG 1134
Query 162652 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCC 162711
|| || ||||||||||||| |||| | || | ||||| | | || | |
Sbjct 1133 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1074
Query 162712 TACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-GT 162770
|| ||||| ||||| |||||||| || |||| | ||||||||||| ||||| ||| ||
Sbjct 1073 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTGT 1015
Query 162771 AGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCA 162830
||||| || || ||||||||||| || | ||||| ||| || |||||||| | |||||
Sbjct 1014 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCA 955
Query 162831 AGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGT 162890
||| || ||||| | ||||| | || ||| |||||| ||||||| |||| ||||
Sbjct 954 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 895
Query 162891 CTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGT 162950
||||| || ||||| |||||||| ||||| || || |||||||| ||||| || |||||
Sbjct 894 ATTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 835
Query 162951 CTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCG 163010
||||| || || || || ||||| ||||| ||||||||||| || ||| | || |
Sbjct 834 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAG 775
Query 163011 TGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 163070
|| || || |||| ||| || || | ||||||| ||||||||||||||||| ||
Sbjct 774 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 715
Query 163071 ATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATT 163130
|||||||| || || || |||||||| || || || ||||||||||||||||| ||
Sbjct 714 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 655
Query 163131 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 163190
|||||| || ||||| || || |||||| | || || ||||| || || || || |||||
Sbjct 654 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 595
Query 163191 CACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 163250
|| || | || | || |||||||| ||| | || || ||||| |||||||| ||
Sbjct 594 TACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATC 535
Query 163251 CATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGG 163310
| ||||| |||| || ||||| | || || ||||| || || | ||||||||
Sbjct 534 TGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 475
Query 163311 TTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGC 163367
| ||||||||||||||||| || || ||||||||||||||||| || ||||| ||
Sbjct 474 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 418
>seq17927
Length=56337
Score = 504 bits (558), Expect = 8e-138
Identities = 732/1025 (71%), Gaps = 14/1025 (1%)
Strand=Plus/Plus
Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680
|||||| | ||||||||||| | | | || || ||||| ||| | |||||||||||
Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063
Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740
|| | || |||| ||| ||| | || | || || ||| | || |||||||| ||
Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123
Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800
|| || || ||||| || |||||| |||| | ||||||| | || ||| |||||| |
Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 4183
Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 163859
|| || || || || || |||||| | | | | ||||| || || || || |||||
Sbjct 4184 ACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTC-GTTGTTGTTACTGTGGGG 4242
Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919
|||||| || || || ||||| || ||| ||| | || || || |||| ||||||
Sbjct 4243 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 4302
Query 163920 GGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG 163979
|| |||||||| || || || | || ||||| ||| | || |||||||||||||||||
Sbjct 4303 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 4362
Query 163980 -CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 164038
||| || | | |||| || ||||| || || ||||||||||| |||||||| || |
Sbjct 4363 ATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 4421
Query 164039 TTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTG 164098
|| |||||| || || || || || |||||||| |||||||||| || || |||||
Sbjct 4422 TTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 4481
Query 164099 GAGTGGCAGCAATCTTCAGAT---TCCTCTTATTCCTTCAAGGATTTCATAACTGGACTT 164155
| || || || || || ||| ||||||| ||| ||||| |||||||| ||||| |
Sbjct 4482 GTGTAGCGGCTATTTTTCGATTTATCCTCTTTTTC---CAAGGGTTTCATAATTGGACAT 4538
Query 164156 TGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTA 164215
||||||| || |||||||||||||| || ||| |||| |||| || |||||| ||||
Sbjct 4539 TGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTA 4598
Query 164216 TTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTA 164275
|||| || | || || |||||||| || | ||||||||| || ||||| || ||
Sbjct 4599 TTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCC 4658
Query 164276 AGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 164335
|| ||| | | || || | ||||| |||||||| |||||||| || |||||||| |
Sbjct 4659 GTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTT 4718
Query 164336 GGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 164395
|||| || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| |
Sbjct 4719 GGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 4778
Query 164396 TTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATC 164455
|||| || || | ||| |||||| || |||| | | || || ||| | || |
Sbjct 4779 TTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACC 4838
Query 164456 TTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGA 164515
| || || || || ||||| || || || | ||||| |||||||| || || ||||
Sbjct 4839 TACGCGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGA 4898
Query 164516 CTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTG 164575
||||||| || || || || | || |||||||| | ||||| ||| | || | |
Sbjct 4899 CTTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 4958
Query 164576 ACCAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCT 164633
| |||| || || ||| || | ||||| || || || || || | || || || ||
Sbjct 4959 ATCAGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016
Query 164634 TTAAT 164638
|||||
Sbjct 5017 TTAAT 5021
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557456369022400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |