Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq11797 560 1e-154 seq17927 504 8e-138 >seq11797 Length=28381 Score = 560 bits (620), Expect = 1e-154 Identities = 700/957 (73%), Gaps = 2/957 (0%) Strand=Plus/Minus Query 162412 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 162471 ||||| || || | || ||||| || || ||||||| || || | ||| | ||||| Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1314 Query 162472 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 162531 | ||| || |||| || | |||||||| || || || || || || || |||||| Sbjct 1313 TCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1254 Query 162532 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 162591 || || |||| || || | || || ||||| || || || |||||| || |||| || Sbjct 1253 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTACT 1194 Query 162592 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 162651 || || || ||| | || || || || || |||||||| ||||| ||||||| ||| Sbjct 1193 TCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGG 1134 Query 162652 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCC 162711 || || ||||||||||||| |||| | || | ||||| | | || | | Sbjct 1133 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1074 Query 162712 TACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-GT 162770 || ||||| ||||| |||||||| || |||| | ||||||||||| ||||| ||| || Sbjct 1073 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTGT 1015 Query 162771 AGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCA 162830 ||||| || || ||||||||||| || | ||||| ||| || |||||||| | ||||| Sbjct 1014 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCA 955 Query 162831 AGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGT 162890 ||| || ||||| | ||||| | || ||| |||||| ||||||| |||| |||| Sbjct 954 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 895 Query 162891 CTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGT 162950 ||||| || ||||| |||||||| ||||| || || |||||||| ||||| || ||||| Sbjct 894 ATTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 835 Query 162951 CTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCG 163010 ||||| || || || || ||||| ||||| ||||||||||| || ||| | || | Sbjct 834 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAG 775 Query 163011 TGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 163070 || || || |||| ||| || || | ||||||| ||||||||||||||||| || Sbjct 774 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 715 Query 163071 ATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATT 163130 |||||||| || || || |||||||| || || || ||||||||||||||||| || Sbjct 714 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 655 Query 163131 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 163190 |||||| || ||||| || || |||||| | || || ||||| || || || || ||||| Sbjct 654 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 595 Query 163191 CACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 163250 || || | || | || |||||||| ||| | || || ||||| |||||||| || Sbjct 594 TACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATC 535 Query 163251 CATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGG 163310 | ||||| |||| || ||||| | || || ||||| || || | |||||||| Sbjct 534 TGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 475 Query 163311 TTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGC 163367 | ||||||||||||||||| || || ||||||||||||||||| || ||||| || Sbjct 474 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 418 >seq17927 Length=56337 Score = 504 bits (558), Expect = 8e-138 Identities = 732/1025 (71%), Gaps = 14/1025 (1%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || || ||||| ||| | ||||||||||| Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||| ||| | || | || || ||| | || |||||||| || Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||| || |||||| |||| | ||||||| | || ||| |||||| | Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 4183 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 163859 || || || || || || |||||| | | | | ||||| || || || || ||||| Sbjct 4184 ACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTC-GTTGTTGTTACTGTGGGG 4242 Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919 |||||| || || || ||||| || ||| ||| | || || || |||| |||||| Sbjct 4243 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 4302 Query 163920 GGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG 163979 || |||||||| || || || | || ||||| ||| | || ||||||||||||||||| Sbjct 4303 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 4362 Query 163980 -CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 164038 ||| || | | |||| || ||||| || || ||||||||||| |||||||| || | Sbjct 4363 ATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 4421 Query 164039 TTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTG 164098 || |||||| || || || || || |||||||| |||||||||| || || ||||| Sbjct 4422 TTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 4481 Query 164099 GAGTGGCAGCAATCTTCAGAT---TCCTCTTATTCCTTCAAGGATTTCATAACTGGACTT 164155 | || || || || || ||| ||||||| ||| ||||| |||||||| ||||| | Sbjct 4482 GTGTAGCGGCTATTTTTCGATTTATCCTCTTTTTC---CAAGGGTTTCATAATTGGACAT 4538 Query 164156 TGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTA 164215 ||||||| || |||||||||||||| || ||| |||| |||| || |||||| |||| Sbjct 4539 TGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTA 4598 Query 164216 TTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTA 164275 |||| || | || || |||||||| || | ||||||||| || ||||| || || Sbjct 4599 TTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCC 4658 Query 164276 AGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 164335 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| | Sbjct 4659 GTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTT 4718 Query 164336 GGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 164395 |||| || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| | Sbjct 4719 GGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 4778 Query 164396 TTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATC 164455 |||| || || | ||| |||||| || |||| | | || || ||| | || | Sbjct 4779 TTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACC 4838 Query 164456 TTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGA 164515 | || || || || ||||| || || || | ||||| |||||||| || || |||| Sbjct 4839 TACGCGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGA 4898 Query 164516 CTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTG 164575 ||||||| || || || || | || |||||||| | ||||| ||| | || | | Sbjct 4899 CTTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 4958 Query 164576 ACCAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCT 164633 | |||| || || ||| || | ||||| || || || || || | || || || || Sbjct 4959 ATCAGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016 Query 164634 TTAAT 164638 ||||| Sbjct 5017 TTAAT 5021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557456369022400