Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_015289.1
Length=176184
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 657 0.0
seq17927 571 7e-158
>seq11797
Length=28381
Score = 657 bits (728), Expect = 0.0
Identities = 725/964 (75%), Gaps = 6/964 (1%)
Strand=Plus/Minus
Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCC---CTGTTTGCTCGCCGCT 164847
||||||||||| | || ||||| |||||| | |||||||| || ||| ||| ||
Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1314
Query 164848 ACAATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGT 164907
| ||| |||||| ||||| || |||||||| || || || |||||||||||||||
Sbjct 1313 TCCGTTT---TTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 1257
Query 164908 GAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCG 164967
|||||||| | || ||||| | ||||| ||||| || || || ||||| | ||||
Sbjct 1256 GAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCT 1197
Query 164968 TCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAA 165027
||||| || ||||| | || || || || ||||||||||||||| || | ||||||
Sbjct 1196 ACTTCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAA 1137
Query 165028 TGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCT 165087
||| | ||||||||||||||||| | | |||| | ||||| | | |||||||||
Sbjct 1136 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 1077
Query 165088 TGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGC 165147
|| || |||||||||||||||||||| || ||| | ||||||||||||||||||
Sbjct 1076 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCT 1017
Query 165148 GTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGT 165207
|| |||||| || ||||| || |||||| | ||||||||| || |||||||| | |||
Sbjct 1016 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGT 957
Query 165208 CAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 165267
||||| || || ||||||||||||||||| || |||||||||||||| |||| ||| |
Sbjct 956 CAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATT 897
Query 165268 GTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 165327
|| ||||| || || ||||||||||||||||| || || |||||| | || || |||||
Sbjct 896 GTATTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 837
Query 165328 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTC 165387
|||||||| || || || || |||||||||||| | | || ||||| | ||
Sbjct 836 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATC 777
Query 165388 CGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAG 165447
| || || || |||| || | || | ||||| | || || |||||||||||
Sbjct 776 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAA 717
Query 165448 ACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCC 165507
|| || ||||| || ||||| || || || || || || | || |||||||| ||
Sbjct 716 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 657
Query 165508 TTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGG 165567
||||||||||| ||||| | || |||||| | || || ||||| ||||| ||||| |||
Sbjct 656 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 597
Query 165568 TTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 165627
|| |||||| | ||| |||| || |||||||| ||| | || || ||||| ||||||||
Sbjct 596 TTTACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAA 537
Query 165628 TCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCT 165687
||| | ||||||||||| | || |||||||||||| || | |||||||||
Sbjct 536 TCTGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 477
Query 165688 GGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCT 165747
|| |||||||||||||||||||| ||||| |||||||||||||| || ||||| |||
Sbjct 476 AACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 417
Query 165748 GCTG 165751
| ||
Sbjct 416 GTTG 413
>seq17927
Length=56337
Score = 571 bits (632), Expect = 7e-158
Identities = 721/988 (73%), Gaps = 2/988 (0%)
Strand=Plus/Plus
Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250
|| || ||||||||||| ||||||||||| || | || |||| ||| ||| |||||
Sbjct 4034 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCT 4093
Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310
| || |||||| |||| || || || || || || ||||||||||||||| | ||
Sbjct 4094 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCC 4153
Query 166311 AGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 166370
|| ||| | || ||| || ||| | || || || ||||||||||| || || |
Sbjct 4154 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGGTTTCTACTCCTGCTAATAGT 4213
Query 166371 ATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 166430
| | ||||| | | | || ||||||||||| || ||||| ||||| | |||
Sbjct 4214 TTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 4273
Query 166431 TGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGT 166490
|| ||| | || || || ||| | ||||||||||||||||| ||||| || |||| |||
Sbjct 4274 TGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGT 4333
Query 166491 TTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAAT 166549
|| ||| | || || |||||| | ||||| ||| | | | || || || ||||||||
Sbjct 4334 TTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAAT 4392
Query 166550 CGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCA 166609
||| || |||||||| |||||||| || ||| |||||| || || || || || |||||
Sbjct 4393 CGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCA 4452
Query 166610 ATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTT 166669
||| ||||||| || || || ||| || || | || || || ||||| |||| ||
Sbjct 4453 ATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATTTTTCGATTTATCCTCTT 4512
Query 166670 CCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTAT 166729
| ||||| || || || |||||| |||||||||||||||||||||| || || ||| |
Sbjct 4513 TTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGT 4572
Query 166730 TCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCA 166789
|| || | || |||| | || || ||||||| ||| ||||| || ||| | | | |
Sbjct 4573 ACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGA 4632
Query 166790 AGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTA 166849
||||||||| |||||||| ||| || || || | ||||||| |||||||| ||
Sbjct 4633 AGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTA 4692
Query 166850 TTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAA 166909
||||||||| || || ||||||| |||||| || ||||| || |||| ||| |||||
Sbjct 4693 TTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAA 4752
Query 166910 GAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCAT 166969
| ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | |
Sbjct 4753 ACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCT 4812
Query 166970 CGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAG 167029
|| | | ||||| ||| | ||||| || || ||||||||||||||||| ||| | |
Sbjct 4813 TGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGACTTTGTTTCCCAGGAAATCCG 4872
Query 167030 GGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGG 167089
||||| || ||||| || ||||| || ||||| || || || ||||| || || || ||
Sbjct 4873 TGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAAAAATATTCTTTTAAACGAAGG 4932
Query 167090 TATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGA 167149
||| ||| |||||||||| || ||||| |||||||| | | |||||||||| ||
Sbjct 4933 TATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 4992
Query 167150 GGTTCTTCCTAGAGGTAACGCTCTCTAA 167177
|||||| || | || |||||||| |||
Sbjct 4993 GGTTCTACCACGTGGAAACGCTCTTTAA 5020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563531778042880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |