Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq11797 657 0.0 seq17927 571 7e-158 >seq11797 Length=28381 Score = 657 bits (728), Expect = 0.0 Identities = 725/964 (75%), Gaps = 6/964 (1%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCC---CTGTTTGCTCGCCGCT 164847 ||||||||||| | || ||||| |||||| | |||||||| || ||| ||| || Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1314 Query 164848 ACAATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGT 164907 | ||| |||||| ||||| || |||||||| || || || ||||||||||||||| Sbjct 1313 TCCGTTT---TTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 1257 Query 164908 GAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCG 164967 |||||||| | || ||||| | ||||| ||||| || || || ||||| | |||| Sbjct 1256 GAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCT 1197 Query 164968 TCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAA 165027 ||||| || ||||| | || || || || ||||||||||||||| || | |||||| Sbjct 1196 ACTTCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAA 1137 Query 165028 TGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCT 165087 ||| | ||||||||||||||||| | | |||| | ||||| | | ||||||||| Sbjct 1136 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 1077 Query 165088 TGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGC 165147 || || |||||||||||||||||||| || ||| | |||||||||||||||||| Sbjct 1076 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCT 1017 Query 165148 GTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGT 165207 || |||||| || ||||| || |||||| | ||||||||| || |||||||| | ||| Sbjct 1016 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGT 957 Query 165208 CAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 165267 ||||| || || ||||||||||||||||| || |||||||||||||| |||| ||| | Sbjct 956 CAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATT 897 Query 165268 GTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 165327 || ||||| || || ||||||||||||||||| || || |||||| | || || ||||| Sbjct 896 GTATTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 837 Query 165328 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTC 165387 |||||||| || || || || |||||||||||| | | || ||||| | || Sbjct 836 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATC 777 Query 165388 CGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAG 165447 | || || || |||| || | || | ||||| | || || ||||||||||| Sbjct 776 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAA 717 Query 165448 ACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCC 165507 || || ||||| || ||||| || || || || || || | || |||||||| || Sbjct 716 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 657 Query 165508 TTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGG 165567 ||||||||||| ||||| | || |||||| | || || ||||| ||||| ||||| ||| Sbjct 656 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 597 Query 165568 TTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 165627 || |||||| | ||| |||| || |||||||| ||| | || || ||||| |||||||| Sbjct 596 TTTACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAA 537 Query 165628 TCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCT 165687 ||| | ||||||||||| | || |||||||||||| || | ||||||||| Sbjct 536 TCTGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 477 Query 165688 GGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCT 165747 || |||||||||||||||||||| ||||| |||||||||||||| || ||||| ||| Sbjct 476 AACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 417 Query 165748 GCTG 165751 | || Sbjct 416 GTTG 413 >seq17927 Length=56337 Score = 571 bits (632), Expect = 7e-158 Identities = 721/988 (73%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || || ||||||||||| ||||||||||| || | || |||| ||| ||| ||||| Sbjct 4034 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCT 4093 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || || || || || ||||||||||||||| | || Sbjct 4094 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCC 4153 Query 166311 AGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 166370 || ||| | || ||| || ||| | || || || ||||||||||| || || | Sbjct 4154 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGGTTTCTACTCCTGCTAATAGT 4213 Query 166371 ATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 166430 | | ||||| | | | || ||||||||||| || ||||| ||||| | ||| Sbjct 4214 TTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 4273 Query 166431 TGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGT 166490 || ||| | || || || ||| | ||||||||||||||||| ||||| || |||| ||| Sbjct 4274 TGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGT 4333 Query 166491 TTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAAT 166549 || ||| | || || |||||| | ||||| ||| | | | || || || |||||||| Sbjct 4334 TTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAAT 4392 Query 166550 CGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCA 166609 ||| || |||||||| |||||||| || ||| |||||| || || || || || ||||| Sbjct 4393 CGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCA 4452 Query 166610 ATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTT 166669 ||| ||||||| || || || ||| || || | || || || ||||| |||| || Sbjct 4453 ATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATTTTTCGATTTATCCTCTT 4512 Query 166670 CCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTAT 166729 | ||||| || || || |||||| |||||||||||||||||||||| || || ||| | Sbjct 4513 TTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGT 4572 Query 166730 TCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCA 166789 || || | || |||| | || || ||||||| ||| ||||| || ||| | | | | Sbjct 4573 ACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGA 4632 Query 166790 AGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTA 166849 ||||||||| |||||||| ||| || || || | ||||||| |||||||| || Sbjct 4633 AGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTA 4692 Query 166850 TTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAA 166909 ||||||||| || || ||||||| |||||| || ||||| || |||| ||| ||||| Sbjct 4693 TTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAA 4752 Query 166910 GAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCAT 166969 | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | | Sbjct 4753 ACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCT 4812 Query 166970 CGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAG 167029 || | | ||||| ||| | ||||| || || ||||||||||||||||| ||| | | Sbjct 4813 TGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGACTTTGTTTCCCAGGAAATCCG 4872 Query 167030 GGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGG 167089 ||||| || ||||| || ||||| || ||||| || || || ||||| || || || || Sbjct 4873 TGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAAAAATATTCTTTTAAACGAAGG 4932 Query 167090 TATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGA 167149 ||| ||| |||||||||| || ||||| |||||||| | | |||||||||| || Sbjct 4933 TATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 4992 Query 167150 GGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 |||||| || | || |||||||| ||| Sbjct 4993 GGTTCTACCACGTGGAAACGCTCTTTAA 5020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563531778042880