Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq11797 553 2e-152 >seq11797 Length=28381 Score = 553 bits (612), Expect = 2e-152 Identities = 704/969 (73%), Gaps = 0/969 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| Sbjct 1391 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1332 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | || ||||| | || || || || ||||| || || || Sbjct 1331 ACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGAT 1272 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | || || ||||| || || || Sbjct 1271 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCA 1212 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 |||||| || |||| |||| || |||||| | || || || || ||||||||||| Sbjct 1211 GGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCT 1152 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||| | || ||||||||||||||| || || || | | ||||| Sbjct 1151 GCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTT 1092 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || || |||||| | |||||||||| | |||||| |||||| Sbjct 1091 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATG 1032 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 ||||||||||| ||| |||||||| ||||| || |||| || || || ||||| Sbjct 1031 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTG 972 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | |||||| | ||||| ||| || || || || ||||||||||| ||||| ||||| Sbjct 971 ATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 912 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||||||| | |||||||| || ||||| |||||||||||||||||||| || ||| Sbjct 911 TTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATG 852 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || || || ||||| ||||| | ||| Sbjct 851 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTA 792 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || || | || |||| |||| Sbjct 791 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 732 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || |||||||||||||| ||||||||||| || || ||||| || ||||| || | ||| Sbjct 731 GGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 672 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || |||||| |||| | | || |||||| | || | | || Sbjct 671 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCG 612 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | || ||||| ||| | | |||||| | || |||||||||||| | |||||| Sbjct 611 GTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGA 552 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| || | || ||| | || || || ||| ||||| || Sbjct 551 TTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGAT 492 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 || ||||| | || ||||| ||||||||||| |||||||| |||||||| ||||||||| Sbjct 491 ATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTC 432 Query 170659 CCACTTGAC 170667 || || ||| Sbjct 431 CCTCTAGAC 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582714586092800