Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq14413 109 4e-19 seq16023 98.7 6e-16 seq17130 95.1 8e-15 seq12257 91.5 1e-13 seq14499 86.0 4e-12 >seq14413 Length=739167 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || ||| ||||||||||| || || | |||| | || |||| || Sbjct 402416 ACCAGGTGAAGAGTTGATTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCATCTTCG 402475 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||||||| ||||| || | ||||||||||| | || | ||||||||||| | Sbjct 402476 AGCTGTTTTCCTGCAAAGATCAAACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGA 402535 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||| || | || | || | |||||| || | || |||||||| Sbjct 402536 ATCTTAGCTTTTACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGAGTGATGGTTTTG 402595 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| ||||| ||||||||| Sbjct 402596 CCGGTAAGGGTCTTTACAAAAATCTGCATA 402625 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | | |||||||| | ||| ||| ||||| ||||| ||||| | Sbjct 402854 CCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT 402913 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || |||||||| ||||| || || |||| |||||||| | || Sbjct 402914 AGAGTACGACCATCCTCGAGCTGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGGG 402973 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| || || |||||| |||||| | || | || | |||||| Sbjct 402974 ATACCCTCTTTATCTTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACT 403033 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| |||||||| || |||||||| ||||||||||| |||||| Sbjct 403034 TCTAGGGTGATGGTTTTACCAGTGAGAGTTTTCACAAAGATTTGCATA 403081 Score = 105 bits (116), Expect = 4e-18 Identities = 152/209 (73%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||| | |||| ||||| || ||||| ||||| | |||| | || |||| || ||||| Sbjct 403333 GTGGAGTGTGGACTCTTTTTGTATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTG 403392 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||| |||||||| || |||| ||||||||| | || | ||||||||||| ||||| Sbjct 403393 TTTACCGGCAAAGATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTT 403452 Query 34898 CTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTC 34953 ||||| || | || || | ||| || ||| || |||| || || ||||| | Sbjct 403453 TGCCTTGAC--AT--TGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTAC 403508 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||||||||| || ||||| |||||| Sbjct 403509 CAGTGAGAGTCTTGACGAAGATTTGCATA 403537 Score = 104 bits (114), Expect = 2e-17 Identities = 154/211 (73%), Gaps = 12/211 (6%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGC 34835 ||||| ||| || || || ||||| ||||| | |||| | || |||| || || Sbjct 403105 GTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCTAAAG--TACGGCCATCCTCAAGT 403162 Query 34836 TGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATC 34895 ||||| |||||||| ||||||| ||||||||| | || | ||||||||||| ||| Sbjct 403163 TGTTTACCGGCAAAGATTAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATC 403222 Query 34896 TTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTT 34951 || ||||| || |||| || | ||| || ||| || || | ||| |||||||| Sbjct 403223 TTGGCCTTGAC--AT--TATCAATGGTGTCCGAGCTCTCCACCTCTAGGGTGATGGTTTT 403278 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||||||||| |||||||| |||||| Sbjct 403279 ACCAGTGAGAGTCTTGACAAAGATTTGCATA 403309 Score = 100 bits (110), Expect = 2e-16 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| | ||| | ||| |||| || |||||||| |||||||| Sbjct 403574 TCCTTTTGGATGTTGTAGTCTGCAAGAGTACGTCCATCCTCGAGCTGTTTACCGGCAAAG 403633 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| | || | ||||||||||| ||||| ||||| || Sbjct 403634 ATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTTGCCTTGAC--AT 403691 Query 34911 GCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | || || | ||| || ||| || |||| || || ||||| || ||||||||||| Sbjct 403692 --TGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTACCAGTGAGAGTCTT 403749 Query 34967 CACAAAGATCTGCATA 34982 || ||||| |||||| Sbjct 403750 GACGAAGATTTGCATA 403765 Score = 100 bits (110), Expect = 2e-16 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| | ||| | ||| |||| || |||||||| |||||||| Sbjct 403935 TCCTTTTGGATGTTGTAGTCTGCAAGAGTACGTCCATCCTCGAGCTGTTTACCGGCAAAG 403994 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| | || | ||||||||||| ||||| ||||| || Sbjct 403995 ATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTTGCCTTGAC--AT 404052 Query 34911 GCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | || || | ||| || ||| || |||| || || ||||| || ||||||||||| Sbjct 404053 --TGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTACCAGTGAGAGTCTT 404110 Query 34967 CACAAAGATCTGCATA 34982 || ||||| |||||| Sbjct 404111 GACGAAGATTTGCATA 404126 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| | ||| | ||| |||| || |||||||| |||||||| Sbjct 404163 TCCTTTTGGATGTTGTAGTCTGCAAGAGTACGTCCATCCTCGAGCTGTTTACCGGCAAAG 404222 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||||| |||||||| | || | ||||||||||| ||||| ||||| || Sbjct 404223 ATTAGTCTCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC--AT 404280 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| || | ||| || |||| || ||||| || || ||||| || || Sbjct 404281 --TATCGATGGTGTCTGAGCTCTCTACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTT 404338 Query 34967 CACAAAGATCTGCAT 34981 ||| ||||| ||||| Sbjct 404339 CACGAAGATTTGCAT 404353 >seq16023 Length=121467 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| ||| || ||||| ||||| ||||| | ||| | || | || Sbjct 24857 CAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTACGACCGTC 24916 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || |||||||| || || || || | || |||||||| | || | || |||||||| Sbjct 24917 CTCGAGCTGTTTGCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCTTCCTTGTC 24976 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 || || |||||| | || | ||| | ||| || || | || ||||| Sbjct 24977 CTGGATTTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATGGT 25036 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||||| | |||||||||||||||||||||| Sbjct 25037 CTTTCCCGTTAAAGTCTTCACAAAGATCTGCATA 25070 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | | |||| |||| || ||||| ||||||||||| Sbjct 25563 TCCTTCTGGATGTTGTAGTCAGCCAATGTTCGGCCATCCTCTAGCTGCTTTCCGGCAAAG 25622 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||| || | || | |||||||| || ||||| ||| || Sbjct 25623 ATCAATCTTTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTAGCTTTAAC---- 25678 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||||| ||| | || || || | ||| ||||| ||||| |||||||| || Sbjct 25679 GTTATCGATTGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTT 25738 Query 34967 CACAAAGATCTGCAT 34981 ||| ||||||||||| Sbjct 25739 CACGAAGATCTGCAT 25753 >seq17130 Length=165301 Score = 95.1 bits (104), Expect = 8e-15 Identities = 164/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| || || | | ||| || |||| || ||| ||||| || || || || | Sbjct 19666 TCCTCCTCTTAAACGGAGAACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGC 19725 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 | | | | || || || ||||||||||| || |||| ||||||||||| | || Sbjct 19726 TAATGTCCTGCCGTCTTCTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGG 19785 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATT----CACCGGCCT 34929 | || |||||||| |||||| |||||| || | |||||| || | | Sbjct 19786 GATACCTTCCTTGTCTTGGATCTTCGATTTGAC--AT--TGTCGATTGTATCAGATGATT 19841 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 |||| || | ||| || ||||| ||||||||||| ||||| ||||||||||| ||| Sbjct 19842 CAACCTCAAGGGTGATTGTTTTCCCCGTGAGAGTTTTCACGAAGATCTGCATCTTC 19897 >seq12257 Length=1143886 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | ||||||||||| || ||| ||||| ||||| || |||| Sbjct 1016193 CCTCCTCTCAAACGGAGAACCAAGTGAAGCGTTGATTCCTTCTGGATGTTGTAATCCGCG 1016252 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | || |||| || |||||||| || || | |||||||| || | || Sbjct 1016253 AGAGTTCTACCGTCCTCCAATTGCTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 1016312 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | || |||||||| ||||| ||| || || ||||||| ||| || || Sbjct 1016313 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCAC--AT--TATCGATCGTATCAGAGGATTC 1016368 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| || | ||| || || || ||||| || || ||||| || |||||||| || Sbjct 1016369 AACCTCTAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATCTT 1016422 >seq14499 Length=662897 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||||||| | ||| | || | || || || ||||| || || || | Sbjct 224165 CCACCCCTCAACCTGAGAACTAGATGGAGGGTTGACTCCTTTTGAATATTGTAATCGGCT 224224 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || |||| || |||||||| ||||| || || |||| ||||||||| | || Sbjct 224225 AAGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGA 224284 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | || |||||||| ||||| ||||| || ||||||| || | ||| Sbjct 224285 ATTCCTTCCTTGTCTTGGATCTTTGCCTTGAC--AT--TATCGATGGTGTCGGAGCTCTC 224340 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||| || ||||| || || |||||||| ||||| ||||| ||||| Sbjct 224341 CACCTCGAGAGTAATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 224391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324561149084736