Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq11797 657 0.0 >seq11797 Length=28381 Score = 657 bits (728), Expect = 0.0 Identities = 729/972 (75%), Gaps = 0/972 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 430 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 489 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | | || ||||| || Sbjct 490 ATATCAGCCCAAGTATTAATAACACGCCCTTGACTATCAACTACAGATTGGTTGAAATTG 549 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 |||||||| | ||||||||||| || |||| ||| | ||||| ||||||||| || || Sbjct 550 AATCCATTTAAGTTAAATGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACT 609 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||||| || ||||| || || | ||||||| ||||||||| |||||| ||| Sbjct 610 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 669 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| ||||| || |||||||| ||||||||| Sbjct 670 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGA 729 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | ||| | | |||| Sbjct 730 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 789 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || || Sbjct 790 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCT 849 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||| |||||||| || |||||||| |||| |||| ||||| Sbjct 850 AACATGTGAAATGGGTGCATAAGAATGTTATGCTCAGCCTGGAATACAATCATGAAGTTG 909 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| || ||||| || | |||||| Sbjct 910 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATAGGATAG 969 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| || |||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 970 ATCAAGAAAACTGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 1029 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| | ||| | ||||||||| ||||||||||| ||| | | |||||| Sbjct 1030 CGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 1089 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | ||||| | |||| |||| |||||| ||||| || ||||||||||| || | | Sbjct 1090 AAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGAT 1149 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || ||||||||||| || || ||||| | ||| ||||| ||| | |||| | ||| Sbjct 1150 GCAGCTTCCCAAATTGGGTAAAAATGCAAACCGATAGCTGCAGAAGTAGGAATAATTGCA 1209 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 || ||||| || ||||||||||| | ||||| |||| || || ||||| ||||| ||| Sbjct 1210 CCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCA 1269 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGA 84884 ||||| ||||| || ||| ||| ||||| || || ||| | ||| || | | || Sbjct 1270 ATATCTACTGGAGGAGCAGCAATAAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAG 1329 Query 84885 GTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACC 84944 || || ||||| | | |||||||| |||| || | |||||| | |||| ||| | | Sbjct 1330 GTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATC 1389 Query 84945 CAATCACAGAAG 84956 || | ||||||| Sbjct 1390 CAGTTACAGAAG 1401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571142835472960