Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq14680 149 7e-31 seq16652 116 4e-21 seq17369 82.4 9e-11 >seq14680 Length=376954 Score = 149 bits (164), Expect = 7e-31 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||||| ||| | || || | |||||| ||||||||| Sbjct 229227 CCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACCA 229286 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| ||||||||| | || | ||||||| || ||| Sbjct 229287 TTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGAA 229346 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| |||||||| || ||| ||| | ||||||| |||||| |||||||| || Sbjct 229347 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATATA 229406 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || || || |||||||| ||||| || ||||||||| ||| Sbjct 229407 CCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448 Score = 109 bits (120), Expect = 6e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | |||||| | || |||||||||||| | |||||| | | || | ||| | Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 ||||||| || |||||||| ||||| | || || || | || || | ||| || Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| |||||||||||| |||| ||| | | ||||| ||| || ||| |||| || Sbjct 229677 CATATGTTGAGGTCTTTCGACAACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTAA 229736 Query 48779 TGTTTTAAAACCAAAATAGT 48798 ||||| || || || |||| Sbjct 229737 AGTTTTGAATCCGAAGTAGT 229756 >seq16652 Length=266037 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||||||| || | || || ||||||||| |||||||| | | || | || | Sbjct 239871 AGTTCCTGAATTGAAGAGAGTAGGTGATGCATGAGTAAACCATCTTTGAGACATTAAATG 239812 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 ||| |||| || ||||||| ||||| || ||| || || | ||| || | ||| | Sbjct 239811 ATAAGTTTGGATTGCAGAATCAATATCTTCTTTATGAATCCCAACAGAAACCCTCATCAG 239752 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||||| ||| | | ||| || ||||||||| |||| | Sbjct 239751 CATGTGTTGAGGCCTTTCAACAACTTTTCCTTGGACTTTTAAGAGATATGATCTTTCAAG 239692 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 |||||||| ||||| || | ||| ||| || ||||| || ||| Sbjct 239691 CGTTTTAAATCCAAAGTAATCATATTCAAAATCTCGATCATAGATGATT 239643 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || ||||| || | ||| | ||||||| || | |||| | ||| || ||||| ||| Sbjct 240192 CCGCCTTGGTCAACATAACGAGCAGTATCATTGAATACTCGCAGCATCGGTACAATGCCA 240133 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||||||||||||| | || | || ||| || |||| Sbjct 240132 TTAGATGTTCCATTAGTACCACGAATATAACTTCCAGTTGCACGAATGTTATGAACTGAA 240073 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| |||||||| || ||| ||| | |||||| ||| | || ||||| || Sbjct 240072 ACACCAATACCACCAGCTGATTTGCTTATCACAGCACATTCTTTCAATGTTTCATATATC 240013 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || || |||||||||||| ||||| || | ||| || ||| Sbjct 240012 CCCTCGATACTATCATCTTTCATACATATCAAAAAGCAGCTA 239971 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 48099 TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCC 48157 |||| || ||||| || ||||| ||||||||||| || || | ||| | | | || || Sbjct 240618 TCATTCTCATATTTTGTGTATAATTTCTCAAATTCTTCACCCCA-ACAATCTGCCAAACC 240560 Query 48158 AGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAA 48217 ||| |||||||||||| | || |||||| | | ||||| ||| ||||| ||| || Sbjct 240559 TGGAGCTTCATTAGGACAAAACAGTGACCACTTCCCATCACTTTGGACTCTCTCCATGAA 240500 Query 48218 TATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTC 48268 | ||| || | ||||||| | ||| ||||| |||| ||| |||| || Sbjct 240499 AAGATCAGGAACCCAAAGACCATAAAACAAATCTCTAGCTCTGTGTTCCTC 240449 >seq17369 Length=42627 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||| ||||| || ||||| |||||||| ||| | || || || |||||||| Sbjct 25691 ACAAGCAAAGTCACAGTGGAGTCCTTCGTCTCTTGATATAAGCTCGTTTGAGAATGTTAA 25632 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAG 19057 ||| |||||||| ||||| || || | |||||| |||| Sbjct 25631 ACCTGGCATCAGACCTCTCTTCTTAAGCCAGAAGATAG 25594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561980133295680