Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq14680 149 7e-31
seq16652 116 4e-21
seq17369 82.4 9e-11
>seq14680
Length=376954
Score = 149 bits (164), Expect = 7e-31
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
|||||||| || | ||| | ||||||| ||| | || || | |||||| |||||||||
Sbjct 229227 CCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACCA 229286
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| | ||||| || || ||| ||||||||| | || | ||||||| || |||
Sbjct 229287 TTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGAA 229346
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| |||||||| || ||| ||| | ||||||| |||||| |||||||| ||
Sbjct 229347 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATATA 229406
Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581
|| || || |||||||| ||||| || ||||||||| |||
Sbjct 229407 CCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448
Score = 109 bits (120), Expect = 6e-19
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
|||||| | |||||| | || |||||||||||| | |||||| | | || | ||| |
Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616
Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718
||||||| || |||||||| ||||| | || || || | || || | ||| ||
Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676
Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778
||||| |||||||||||| |||| ||| | | ||||| ||| || ||| |||| ||
Sbjct 229677 CATATGTTGAGGTCTTTCGACAACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTAA 229736
Query 48779 TGTTTTAAAACCAAAATAGT 48798
||||| || || || ||||
Sbjct 229737 AGTTTTGAATCCGAAGTAGT 229756
>seq16652
Length=266037
Score = 116 bits (128), Expect = 4e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
|||||||||||| || | || || ||||||||| |||||||| | | || | || |
Sbjct 239871 AGTTCCTGAATTGAAGAGAGTAGGTGATGCATGAGTAAACCATCTTTGAGACATTAAATG 239812
Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718
||| |||| || ||||||| ||||| || ||| || || | ||| || | ||| |
Sbjct 239811 ATAAGTTTGGATTGCAGAATCAATATCTTCTTTATGAATCCCAACAGAAACCCTCATCAG 239752
Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778
||| | |||||| |||||||||| ||| | | ||| || ||||||||| |||| |
Sbjct 239751 CATGTGTTGAGGCCTTTCAACAACTTTTCCTTGGACTTTTAAGAGATATGATCTTTCAAG 239692
Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827
|||||||| ||||| || | ||| ||| || ||||| || |||
Sbjct 239691 CGTTTTAAATCCAAAGTAATCATATTCAAAATCTCGATCATAGATGATT 239643
Score = 107 bits (118), Expect = 2e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
|| ||||| || | ||| | ||||||| || | |||| | ||| || ||||| |||
Sbjct 240192 CCGCCTTGGTCAACATAACGAGCAGTATCATTGAATACTCGCAGCATCGGTACAATGCCA 240133
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| | ||||| || || ||||||||||||| | || | || ||| || ||||
Sbjct 240132 TTAGATGTTCCATTAGTACCACGAATATAACTTCCAGTTGCACGAATGTTATGAACTGAA 240073
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| |||||||| || ||| ||| | |||||| ||| | || ||||| ||
Sbjct 240072 ACACCAATACCACCAGCTGATTTGCTTATCACAGCACATTCTTTCAATGTTTCATATATC 240013
Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581
|| || |||||||||||| ||||| || | ||| || |||
Sbjct 240012 CCCTCGATACTATCATCTTTCATACATATCAAAAAGCAGCTA 239971
Score = 89.7 bits (98), Expect = 6e-13
Identities = 124/171 (73%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 48099 TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCC 48157
|||| || ||||| || ||||| ||||||||||| || || | ||| | | | || ||
Sbjct 240618 TCATTCTCATATTTTGTGTATAATTTCTCAAATTCTTCACCCCA-ACAATCTGCCAAACC 240560
Query 48158 AGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAA 48217
||| |||||||||||| | || |||||| | | ||||| ||| ||||| ||| ||
Sbjct 240559 TGGAGCTTCATTAGGACAAAACAGTGACCACTTCCCATCACTTTGGACTCTCTCCATGAA 240500
Query 48218 TATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTC 48268
| ||| || | ||||||| | ||| ||||| |||| ||| |||| ||
Sbjct 240499 AAGATCAGGAACCCAAAGACCATAAAACAAATCTCTAGCTCTGTGTTCCTC 240449
>seq17369
Length=42627
Score = 82.4 bits (90), Expect = 9e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019
||| ||||| ||||| || ||||| |||||||| ||| | || || || ||||||||
Sbjct 25691 ACAAGCAAAGTCACAGTGGAGTCCTTCGTCTCTTGATATAAGCTCGTTTGAGAATGTTAA 25632
Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAG 19057
||| |||||||| ||||| || || | |||||| ||||
Sbjct 25631 ACCTGGCATCAGACCTCTCTTCTTAAGCCAGAAGATAG 25594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561980133295680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |