Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq11797 497 3e-136 >seq11797 Length=28381 Score = 497 bits (550), Expect = 3e-136 Identities = 702/984 (71%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 1400 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1341 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921 ||||| || |||| | | || ||| | |||||| | || || || || || || Sbjct 1340 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCCT 1281 Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 1280 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1221 Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041 || || ||||| ||| | | || | ||| || ||||| | ||||||||||| || Sbjct 1220 ATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAATT 1161 Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101 |||||||||| | | || || ||||||||||| || || || ||| |||| ||| | Sbjct 1160 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1101 Query 26102 TTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGA 26161 | ||||| ||| | || ||||| ||| || | |||||||||| || | | Sbjct 1100 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1041 Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221 | || ||| | || ||||| |||||||||| |||| || | | || ||| ||| Sbjct 1040 TTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCA 981 Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || ||||| | |||||| | || ||||| || ||| |||||| |||||||| || ||| Sbjct 980 GTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATC 921 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 ||||||||||| ||||| ||| | |||||||| || || ||||| || || ||||||||| Sbjct 920 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCCA 861 Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401 || || ||| ||||| ||||| || ||||| || | || || ||||||||| || Sbjct 860 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 801 Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461 |||||| ||||| | || ||||| ||||| | | || ||| | || Sbjct 800 TCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 741 Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521 || | || || ||||| ||||| || || || ||||| ||||| || || || ||||| Sbjct 740 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGC 681 Query 26522 AGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581 |||| || || || ||||| ||||| || || |||||| | |||||||| | || Sbjct 680 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 621 Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAAC 26641 |||||||||| || || || ||| | || || | ||||| | || |||||||||||| Sbjct 620 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTAAC 561 Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTAC 26700 ||||||| || || || ||||| || ||||| ||| || || || | || || ||| Sbjct 560 TTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTA-ATAC 502 Query 26701 ATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGC 26760 ||||||||| | | ||||| |||||||| || | ||||||||||| || |||||||| Sbjct 501 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 442 Query 26761 TCATAACTTTCCACTTGACTTAGC 26784 ||| ||||| || || ||| |||| Sbjct 441 TCACAACTTCCCTCTAGACCTAGC 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146694493610688