Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_016659.1
Length=47536
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 544 2e-150
>seq11797
Length=28381
Score = 544 bits (602), Expect = 2e-150
Identities = 720/999 (72%), Gaps = 0/999 (0%)
Strand=Plus/Plus
Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496
|| || |||| || |||| ||| |||||||||||||| || ||||| |||||||||||
Sbjct 402 TGGAGCCTCAACAACAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 461
Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556
|||||| || | || |||||||||| ||| ||||||||||| | || | || |
Sbjct 462 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTG 521
Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616
|||||| || || || ||||| || || || || | ||||| |||||||| |
Sbjct 522 ACTATCAACTACAGATTGGTTGAAATTGAATCCATTTAAGTTAAATGCCATAGTACTAAT 581
Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676
|| | ||| |||| ||| || | || |||||||| || | |||||||||||||
Sbjct 582 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 641
Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736
||| ||| || || |||||||| |||||||| | || ||||| || |||||||| ||
Sbjct 642 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGC 701
Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796
|||||||| || || ||||||||||| |||||| | || || | || |||||||
Sbjct 702 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 761
Query 25797 CCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAA 25856
| || ||||| | || | ||||| || | | || ||||||||| ||||
Sbjct 762 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 821
Query 25857 AGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTG 25916
| || |||||||| || || ||||| | ||| || || || |||||||| || || ||
Sbjct 822 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTATG 881
Query 25917 TTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976
|| ||||| || |||| ||| || |||||||| || || || || ||||||||||||||
Sbjct 882 CTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 941
Query 25977 AGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 26036
||| || || ||||| |||| ||| |||| ||||| || ||| || |||||||||||
Sbjct 942 AGAAAAGCTTCCTTGACCAATAGGATAGATCAAGAAAACTGCAGTAGCAGCTGCAACAGG 1001
Query 26037 GGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTG 26096
|||||||| || ||| ||||| || | ||| || | | ||||||||||||| |
Sbjct 1002 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTC 1061
Query 26097 TCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCC 26156
|| |||| ||| | | || | | |||||| | ||||| |||| ||| || ||
Sbjct 1062 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1121
Query 26157 ACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 26216
|||||| || | ||| || || | || |||||||||||| |||||||| || || | |||
Sbjct 1122 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAATGCAAACC 1181
Query 26217 GATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGC 26276
||| || ||| | || | ||||| ||||| || || |||||||| || || | |
Sbjct 1182 GATAGCTGCAGAAGTAGGAATAATTGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 1241
Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 26336
||| || ||||| |||||||||||||| ||||| || ||||| ||||||| |||||| ||
Sbjct 1242 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATAAATGCGAT 1301
Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 26396
| ||| | | ||| || || | | ||||||||| | || |||||||| || |
Sbjct 1302 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1361
Query 26397 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435
|| || ||||| | || || || | ||||| ||| ||
Sbjct 1362 GTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151960548231712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |