Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq16023 107 1e-18 seq12257 95.1 9e-15 seq14413 89.7 4e-13 seq14499 86.0 5e-12 >seq16023 Length=121467 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| ||||| ||||| || || || ||| || || || |||||||||| | Sbjct 25071 CCACCACGTAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCT 25130 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || || | |||||| |||||||| |||| | ||| || |||| ||| Sbjct 25131 AGAGTACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGG 25190 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| ||| || | | | || || |||||| Sbjct 25191 ATTCCCTCCTTGTCTTGGATCTTTGCTTTAACGTTGTCGATGGTATCGGAGCTTTCCACC 25250 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || |||||||| ||||| || || || ||||| Sbjct 25251 TCCAAGGTGATGGTCTTGCCCGTCAAGGTTTTAACGAAGATTTGCAT 25297 >seq12257 Length=1143886 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || ||||| || || || || |||||||| | ||| ||| | |||| ||| Sbjct 1016211 ACCAAGTGAAGCGTTGATTCCTTCTGGATGTTGTAATCCGCGAGAGTTCTACCGTCCTCC 1016270 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| ||||| || |||| || || ||||||| || | ||| |||||||| Sbjct 1016271 AATTGCTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGGATGCCTTCCTTGTCCTGG 1016330 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | | || || | || ||||| | || || || || Sbjct 1016331 ATCTTGGCTTTCACATTATCGATCGTATCAGAGGATTCAACCTCTAGGGTGATTGTCTTC 1016390 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| | ||||| || |||||||||||| Sbjct 1016391 CCCGTTAGGGTTTTCACGAAAATCTGCATC 1016420 >seq14413 Length=739167 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||||||||| | ||| | ||| |||| || | || || |||||||| Sbjct 402205 CTCCTTCTGGATATTGTAATCCGCAAGAGTGCGACCGTCTTCAAGTTGTTTCCCGGCAAA 402264 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || |||| ||| || || | ||||| ||| |||||||| |||||| || || Sbjct 402265 GATGAGTCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACGTT 402324 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | ||||| || || |||| ||||| || || || |||||||| ||||| Sbjct 402325 GTCAATGGTGTCTGAGCTTTCAACTTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTTAC 402384 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 402385 GAAGATCTGCAT 402396 >seq14499 Length=662897 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| |||||||| ||||||| ||| | || | || || | ||| || ||||| || Sbjct 223060 CTCTTTCTGAATATTATAATCAGCAAGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAA 223119 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || ||| || |||| || | || || || || |||||| ||| ||| Sbjct 223120 GATCAATCTCTGCTGGTCCGGTGGGATACCTTCTTTATCTTGGATCTTTGCTTTCACATT 223179 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || || || || || | ||||| ||||| || ||||| || || || Sbjct 223180 ATCAATAGTATCCGAGCTTTCAACTTCTAATGTAATGGTTTTACCGGTCAATGTCTTAAC 223239 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 223240 AAAAATCTGCAT 223251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380852583298776