Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq13562 89.7 1e-12 seq12464 89.7 1e-12 seq13421 86.0 1e-11 >seq13562 Length=1494055 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365 |||||| || |||||||| ||||||| | || || || || ||| || |||||| Sbjct 927375 AGAAGGAAAGCTTGATCCTGTAATTGGAAGAGACGACGAGATTCGAAGATGTA-TTCAGA 927433 Query 150366 TTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAA 150425 |||||||| | | ||| || || ||| || |||| |||||||||||||||||||||||| Sbjct 927434 TTCTTTCTAGAAGAACAAAGAACAATCCTGTGTTAATTGGTGAACCAGGTGTTGGTAAAA 927493 Query 150426 C 150426 | Sbjct 927494 C 927494 >seq12464 Length=72959 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365 |||||| || |||||||| ||||||| | || |||| || || ||| || |||||| Sbjct 34625 AGAAGGAAAGCTTGATCCTGTAATTGGAAGAGATGATGAAATTCGAAGATGTA-TTCAGA 34567 Query 150366 TTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAA 150425 |||||||| | | ||| || || ||| || |||| ||||||| |||||||| ||||||| Sbjct 34566 TTCTTTCTAGAAGAACAAAGAACAATCCTGTGTTAATTGGTGAGCCAGGTGTCGGTAAAA 34507 Query 150426 C 150426 | Sbjct 34506 C 34506 >seq13421 Length=836316 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 150360 TTCAGATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTG 150419 ||| ||||||||| | | ||| || || || || | | || ||||||||||| | Sbjct 233120 TTCGGATTCTTTCAAGAAGAACAAAGAACAACCCTGTACTTATAGGAGAACCAGGTGTGG 233061 Query 150420 GTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATT 150479 | |||||| | || || || ||||||||| | || | || || ||||| || || Sbjct 233060 GCAAAACAGCTGTTGTGGAAGGTTTAGCACAAAGAATTGTGAAGGGAGATGTGCCCAATA 233001 Query 150480 CTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGT 150539 | | | ||||| | | |||||||| | ||||||||||| |||||| |||||| Sbjct 233000 GTCTTACTGATGTAAGATTGATTTCTTTGGACATGGGTGCATTGGTGGCTGGTGCTAAGT 232941 Query 150540 ATCGTGGTGAATTCGAAGAA 150559 | || || ||||| |||||| Sbjct 232940 ACCGAGGAGAATTTGAAGAA 232921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147321149471376