Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq11797 587 8e-163 >seq11797 Length=28381 Score = 587 bits (650), Expect = 8e-163 Identities = 732/999 (73%), Gaps = 18/999 (2%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| || || | || | || ||||| ||||| |||||| Sbjct 1397 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 1338 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCT 162618 |||||| ||| | | ||||||| | || || || ||||| ||||| || ||| Sbjct 1337 ATCCCTACCTTATT---GACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCCT 1281 Query 162619 CCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAAC 162678 ||||| ||||| |||||||| | ||||||||| | || || ||||| || || ||||| Sbjct 1280 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1221 Query 162679 ATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATC 162738 || || || ||||| | |||||| ||| ||||| ||| | || || || || || Sbjct 1220 ATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAATT 1161 Query 162739 TGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTC 162798 |||||||| ||| | ||||||| ||| | || || ||||| |||| |||| | || Sbjct 1160 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1101 Query 162799 TTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTAC 162855 | ||||| | | || | ||| | | | |||||| ||||||||||| || | Sbjct 1100 CTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1044 Query 162856 CGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTC 162915 || || ||||||||||||||||| ||||||||| || || || || | || || Sbjct 1043 CGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 984 Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 || || |||||| |||||||| | |||||||| || ||||| | |||||||| || Sbjct 983 GCAGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 924 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || ||||||||||| |||| |||| | || ||||| || ||||| ||||| || |||||| Sbjct 923 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCAC 864 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || || || ||| | || || || ||||||||||| || || || |||||||||||||| Sbjct 863 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 804 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155 |||||| | || |||||| | | ||||| ||||| || || | || || || | Sbjct 803 GGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 744 Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| | ||||| ||||||||||| |||||||||||||| ||||||||||| || ||| Sbjct 743 GGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 684 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 || || ||||||||||| ||||| ||||||||| || ||||| | || |||||| | Sbjct 683 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 624 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335 || || | || || || | || ||||| ||||| | ||| | ||||||||||| Sbjct 623 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTT 564 Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATT 163392 ||| | || || ||||| ||||||||||| || ||||| ||| || || ||| Sbjct 563 AACTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGT---GTTATT 507 Query 163393 CCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGT 163452 ||||||||| ||||| ||||| | || |||||||||||||||||||| || ||| Sbjct 506 AATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 447 Query 163453 AATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 ||||||||||||||||| || ||||| |||| || |||| Sbjct 446 AATGCTCACAACTTCCCTCTAGACCTAGCTGTTGTTGAG 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552958198889280