Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_019444.1
Length=176043
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 529 2e-145
seq17927 499 3e-136
seq14836 123 3e-23
seq17628 116 4e-21
seq15851 82.4 9e-11
>seq11797
Length=28381
Score = 529 bits (586), Expect = 2e-145
Identities = 697/966 (72%), Gaps = 0/966 (0%)
Strand=Plus/Minus
Query 162919 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 162978
||||| || || | || ||||| || || ||||||| || || | ||| | ||||||
Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1314
Query 162979 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAG 163038
| ||| || |||| || | |||||||| || || || ||||| || || |||||
Sbjct 1313 TCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1254
Query 163039 CCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCT 163098
|| || |||| || || | || || ||||| || || || |||||| || |||| ||
Sbjct 1253 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTACT 1194
Query 163099 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 163158
|| || || ||| | || || || || || |||||||| ||||| ||||||| |||
Sbjct 1193 TCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGG 1134
Query 163159 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCA 163218
|| || ||||||||||||| |||| | || | ||||| | | || | |
Sbjct 1133 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1074
Query 163219 TATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTA 163278
|||||||| ||||| ||||||||| | || || |||||||| || ||||| |||
Sbjct 1073 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 1014
Query 163279 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 163338
||||| || || ||||||||||| || | ||||| ||| || |||||||| | ||||||
Sbjct 1013 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCAA 954
Query 163339 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTC 163398
|| || ||||| | ||||| || || |||||||| || ||||||| |||| ||||
Sbjct 953 GGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTA 894
Query 163399 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTC 163458
||||| || ||||| ||||| || |||||||| || || ||||| || || ||||||||
Sbjct 893 TTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 834
Query 163459 TTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGT 163518
||||| || || || || || |||||||| | | || || ||| | || |
Sbjct 833 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGG 774
Query 163519 GAGACGACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACA 163578
|| || || |||| ||| || || | ||||||| || |||||||||||||| ||
Sbjct 773 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 714
Query 163579 TACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 163638
|||||||| || || || ||||| || || || || ||||||||||||||||| |||
Sbjct 713 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTC 654
Query 163639 AACAACAGCAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTT 163698
||||| | | | || |||||| | || || ||||| || || || || ||||||
Sbjct 653 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 594
Query 163699 ACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 163758
||||| | || | || || |||||||| ||| | || || ||||| |||||||| ||
Sbjct 593 ACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATCT 534
Query 163759 ATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGT 163818
| ||||| |||| || ||||| | || |||||||| || | ||||||| |||
Sbjct 533 GTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 474
Query 163819 CTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCT 163878
|| |||||||||||||||||||| ||||| || ||||||||||| || || || |||| |
Sbjct 473 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGTT 414
Query 163879 GCTGAG 163884
| ||||
Sbjct 413 GTTGAG 408
>seq17927
Length=56337
Score = 499 bits (552), Expect = 3e-136
Identities = 719/1010 (71%), Gaps = 8/1010 (1%)
Strand=Plus/Plus
Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678
||||||||| | | || ||||| |||||||| || |||||||| || | || ||
Sbjct 4016 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 4075
Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738
|| ||| ||| | || | || |||||| | || || ||| | ||||| || |||
Sbjct 4076 CCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 4135
Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798
|| || ||||| | || ||||||| | |||||| || ||| | || || || ||
Sbjct 4136 TATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGGTT 4195
Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164858
|| || |||||| || | | | ||||| | | |||| ||||||||||| | ||
Sbjct 4196 TCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCACAA 4255
Query 164859 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGT 164918
|| |||| || ||||| ||| | || || || |||| ||| || |||||||||||
Sbjct 4256 GGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGC 4315
Query 164919 GCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTAT 164977
|| ||||| |||| ||||| ||| | || || ||||| || || || ||| | | |
Sbjct 4316 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 4374
Query 164978 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 165037
|| ||||| ||||| || || ||||||||||| |||||||||||||| ||||||||
Sbjct 4375 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCT 4434
Query 165038 TATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 165097
|| || ||||| ||||| || ||||||| || || || ||||| || || || ||
Sbjct 4435 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 4494
Query 165098 CTTTAGAT---TCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCA 165154
||| ||| |||| || ||| ||||| || || || ||||| | ||||| || ||
Sbjct 4495 TTTTCGATTTATCCTCTTTTTC---CAAGGGTTTCATAATTGGACATTGAACCCATTTCA 4551
Query 165155 TATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCAC 165214
||||||||| || || ||| | |||| | || |||||| ||||||||||| | ||
Sbjct 4552 TATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTAC 4611
Query 165215 AGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTC 165274
|| |||||||| |||| || ||||| || |||||||| || || ||| | |
Sbjct 4612 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCC 4671
Query 165275 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 165334
|| || | ||||| |||||||| |||||||| || |||||||| ||||| || |||||
Sbjct 4672 AACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTT 4731
Query 165335 CGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 165394
|| |||| ||||| || || || ||| | ||||| || ||||| ||||| || || |
Sbjct 4732 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAAC 4791
Query 165395 GGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGA 165454
||| | |||| || |||| | | ||||| ||| | ||||| || || || ||
Sbjct 4792 TGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGA 4851
Query 165455 TTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAA 165514
|| || ||||| ||| | ||||| |||||||| ||||||||||| |||||||| ||
Sbjct 4852 CTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAA 4911
Query 165515 AAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGA 165574
||| || || || || ||||| | ||||||||| |||| || ||||| || |||||
Sbjct 4912 AAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 4971
Query 165575 AAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624
|||| |||| ||||| || || || | || | || ||||| |||||||
Sbjct 4972 AAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 5021
>seq14836
Length=433140
Score = 123 bits (136), Expect = 3e-23
Identities = 150/202 (74%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 164048 TGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTAC 164107
||||| || ||| ||| |||| ||||| || |||||||| ||| |||| | || |
Sbjct 174403 TGTGATGACGATGTCTACGTTCTTGACGCTGCTGAAGAAGCTGGAATTGACTTGCCTTTC 174462
Query 164108 TCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGAT 164167
||||| ||| ||||| |||| || ||||| |||||| |||| ||||| | | ||||
Sbjct 174463 TCTTGCCGTTCTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCTGGTAATATTGAC 174522
Query 164168 CAGAGTGATCAGTCA-TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTG 164226
|||| ||| | ||| ||||| || ||||||||||| || || || | || || || ||
Sbjct 174523 CAGACAGATAA-TCAGTTCCTTGATGATGATCAGATGGCTGCTGGCTATGTCCTCACTTG 174581
Query 164227 TGTAGCATATCCAACATCTGAT 164248
|||||| || || || ||||||
Sbjct 174582 TGTAGCTTACCCTACTTCTGAT 174603
>seq17628
Length=99897
Score = 116 bits (128), Expect = 4e-21
Identities = 148/201 (74%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 164054 GAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGT 164113
||||| ||||||||||| |||||||| ||||||||||||||||| | |||||| ||
Sbjct 84536 GAGGACCAATACATTCTCGACGCAGCTGAAGAAGCAGGAGTTGAACTGCCTTACTCGTGC 84477
Query 164114 CGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGT 164173
| ||||| || || | | | |||||||| || || | | |||| ||||||||||
Sbjct 84476 AGAGCTGGAGCGTGTTGCACGTGTGCAGGGAAGATCGAAAAAGGAAGTGTTGATCAGTCA 84417
Query 164174 GATCAGTCATTCCTAGACGATGATCAGATTGCAGCA-GGATTCGTGCTTACGTGTGTAGC 164232
||| || ||||| || ||| || ||| | || | || | ||| || || ||||||||
Sbjct 84416 GATGGTTCGTTCCTTGATGATAATATGATCG-AGAATGGCTACGTACTGACTTGTGTAGC 84358
Query 164233 ATATCCAACATCTGATTGTGT 164253
|| || ||| ||||||||
Sbjct 84357 TTACCCGCAATCAGATTGTGT 84337
>seq15851
Length=433742
Score = 82.4 bits (90), Expect = 9e-11
Identities = 130/185 (70%), Gaps = 1/185 (1%)
Strand=Plus/Plus
Query 164054 GAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGT 164113
|| || |||||||| || || ||||| |||||||||||| |||| || | |||| ||
Sbjct 393560 GACGACCAATACATCCTTGAAGCAGCTGAAGAAGCAGGACTTGACATGCCTCACTCATGC 393619
Query 164114 CGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGT 164173
|||||||| || ||| |||| || || | ||||| || |||||||| ||| |
Sbjct 393620 AAGGCTGGTGCATGTTCCACATGCGCTGGACAGATTGTGAAGGGTACTGTTGACCAGTCT 393679
Query 164174 GATCAGTCATTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCA 164233
|| || | || || || || ||||| | ||| | ||| || || ||||||||
Sbjct 393680 GAGGGTTCGTATCTTGAAGAAGACCAGATGGAGAGAGGTTACGTACTGACTTGTGTAGC- 393738
Query 164234 TATCC 164238
|||||
Sbjct 393739 TATCC 393743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563080681322560
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