Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq14499 95.1 1e-14 seq16938 91.5 1e-13 >seq14499 Length=662897 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || |||||||| | || || |||||||| || ||| || ||| Sbjct 224163 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCA 224104 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || ||| ||| ||||| || ||| | || |||||| Sbjct 224103 GACACCATCGATAATGTTAAAGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCAG 224044 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||||||||| || ||||||||| | |||||| || | |||||||| || Sbjct 224043 CAGAGACTTATCTTCGCAGGCAAACAACTCGAAGATGGCCGTACCTTAGCCGATTACAAT 223984 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| || || ||||| ||| |||| | || ||| |||| || || Sbjct 223983 ATCCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTAAGAGGTGGTAT 223934 >seq16938 Length=276168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||||||||| | || |||||||||||||| |||||||| || || ||| | ||| Sbjct 257162 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCCGGTAAGCAACTAGAA 257103 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756 ||| | ||| | |||||||| ||||| || |||||||||||||| || Sbjct 257102 GATGGCAGAACACTTGCCGATTACAACATCCAGAAAGAATCTACTCTTCA 257053 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||||||||| | || |||||||||||||| ||||||||||| || ||| | ||| Sbjct 249658 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCGGGTAAGCAACTAGAA 249717 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756 ||| | ||| | || ||||| ||||| || ||||| |||||||| || Sbjct 249718 GATGGAAGAACACTTGCGGATTACAACATCCAGAAAGAGTCTACTCTTCA 249767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425309859220248