Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq14499 95.1 1e-14
seq16938 91.5 1e-13
>seq14499
Length=662897
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||| || |||||||| | || || |||||||| || ||| || |||
Sbjct 224163 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCA 224104
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | || | || ||| ||| ||||| || ||| | || ||||||
Sbjct 224103 GACACCATCGATAATGTTAAAGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCAG 224044
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|||||||||||||| || ||||||||| | |||||| || | |||||||| ||
Sbjct 224043 CAGAGACTTATCTTCGCAGGCAAACAACTCGAAGATGGCCGTACCTTAGCCGATTACAAT 223984
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
|| ||||| || || ||||| ||| |||| | || ||| |||| || ||
Sbjct 223983 ATCCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTAAGAGGTGGTAT 223934
>seq16938
Length=276168
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706
||||||||||| | || |||||||||||||| |||||||| || || ||| | |||
Sbjct 257162 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCCGGTAAGCAACTAGAA 257103
Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756
||| | ||| | |||||||| ||||| || |||||||||||||| ||
Sbjct 257102 GATGGCAGAACACTTGCCGATTACAACATCCAGAAAGAATCTACTCTTCA 257053
Score = 86.0 bits (94), Expect = 5e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706
||||||||||| | || |||||||||||||| ||||||||||| || ||| | |||
Sbjct 249658 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCGGGTAAGCAACTAGAA 249717
Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756
||| | ||| | || ||||| ||||| || ||||| |||||||| ||
Sbjct 249718 GATGGAAGAACACTTGCGGATTACAACATCCAGAAAGAGTCTACTCTTCA 249767
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425309859220248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |