Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq11797 558 1e-154 >seq11797 Length=28381 Score = 558 bits (618), Expect = 1e-154 Identities = 721/989 (73%), Gaps = 10/989 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 417 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 476 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 477 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATCAACTACA-- 534 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||||||||| | ||||| |||||||| || || | || || Sbjct 535 -GATTGGTTGAAATTGAATCCATTTAAGTTAAATGCCATAGTACTAATACCTAAAGCAGT 593 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 || ||| || | || |||||||| || ||||||||||||| | | |||||| Sbjct 594 AAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTT 653 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || ||||| || || Sbjct 654 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTA 713 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||||||||| || ||| | || || | || ||| ||| || || ||||| Sbjct 714 AGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 773 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 || || | ||||| || | | || ||||||||| |||| | || ||||| Sbjct 774 CCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAA 833 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || ||||| | ||| || || || |||||||| || || || || || ||||| Sbjct 834 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTATGCTCAGCCTGGAA 893 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | |||||| ||||||||||| || || ||||||||||||||||| || || || Sbjct 894 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 953 Query 18371 TTGTCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 ||| |||| |||||| | | ||||| |||| || | |||||||| || || || ||||| Sbjct 954 TTGACCAATAGGATAGATCAAGAAA-ACTGCAGTA-GCAGCTGCAACAGGAGCTGAATAT 1011 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| |||||| || |||||||| | | ||||||||||||| | || ||||| Sbjct 1012 GCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCCATA 1071 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| || | || | | |||||| | ||||| |||| ||| || || ||||| ||| Sbjct 1072 TAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTAT 1131 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 | ||| || || | || |||||||||||| |||||||| || || | |||||| || | Sbjct 1132 AGCCATTCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAATGCAAACCGATAGCTGCA 1191 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || | || | ||||| ||||| || || |||||||| || || | | ||| || ||| Sbjct 1192 GAAGTAGGAATAATTGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACA 1251 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728 || |||||||||||||| || || || ||||||||||||| |||||| || | ||| | Sbjct 1252 GGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATAAATGCGATAATAAAAACG 1311 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 | || |||||| || | | ||||||||| | || |||||||| || | ||| || ||| Sbjct 1312 GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGG 1371 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAA 18817 || | || || || | ||||| ||| || Sbjct 1372 TTTTCAGTGCTGGTTATCCAGTTACAGAA 1400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151285495057328