Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq17927 547 8e-151
seq11797 536 2e-147
seq14836 100 4e-16
>seq17927
Length=56337
Score = 547 bits (606), Expect = 8e-151
Identities = 733/1017 (72%), Gaps = 8/1017 (1%)
Strand=Plus/Minus
Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769
|||||||| || | ||| | ||||| ||||| |||| || ||||||||| || |||||
Sbjct 5016 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 4957
Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829
| |||| ||| ||||| | |||||| || || || || || || |||||||| |||
Sbjct 4956 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTGTAGAAAGTC 4897
Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889
|| || || |||||||| ||||| | ||| || ||||| ||||||||||| || || |||
Sbjct 4896 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCGCGTAGG 4837
Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949
|| | ||| ||||| | | || | | ||| |||| | ||| | || || |||||
Sbjct 4836 TTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTACAAAT 4777
Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009
| |||||||||||| ||||| | ||||| ||| |||| ||||||||||| |||||
Sbjct 4776 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 4717
Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069
|| ||||| || || |||||||||||||| ||||| |||| || | | || || |
Sbjct 4716 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 4657
Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129
|| || ||||| ||||||||||||| | | ||| || || ||||| |||| || ||
Sbjct 4656 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 4597
Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189
|| | ||||| || | ||||| | ||| || || ||||||||||| |||||||| |
Sbjct 4596 GCGCATAGCAGAGCCGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGTTCAAT 4537
Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249
||||| ||||| || || || | ||||| | |||| ||| || || || ||||||||
Sbjct 4536 GTCCAATTATGAAACCCTTGGAAAAAGAGGATAAATCGAAAAATAGCCGCTACACCAAAA 4477
Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309
|||||||||||||||| || || || || ||||| || || || ||| ||||||
Sbjct 4476 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAACAAAA 4417
Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369
||||| || || |||||||| || || ||||| || || || | | || | | |||
Sbjct 4416 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCA 4357
Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429
| || |||||||| | ||| ||||| || | || || || ||||||||||| ||||||
Sbjct 4356 AGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAAA 4297
Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489
| ||| || || || | ||| ||| | ||||||||||| ||||||||||||||
Sbjct 4296 GTCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAC 4237
Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549
|||| | | ||||| | | | | |||||| || || || ||||| || | |||
Sbjct 4236 AGTAACAACAACGAATGCGCTAAACTATTAGCAGGAGTAGAAACCGCAGCGGTTAAAAAA 4177
Query 102550 TTAGCACCTTCAAGGTAACTAG--AC--GCAAGCCCGTGGGTATACCAGGAAGTAGCAAA 102605
|| |||||| ||| ||| || || | || || |||||||| ||||| ||||
Sbjct 4176 TTGCAACCTTC----TAAATAGGAACTGGCCAATCCATGAGTATACCATGAAGTTACAAA 4121
Query 102606 CGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCC 102665
|| || || || | ||| ||||| | || | ||| ||| ||||| || | ||| ||
Sbjct 4120 GGTTGTACCTGTGAACCAACCCCCTAAAGCAAAATAGGCACAAGGAAAGAGCAATAGACC 4061
Query 102666 AGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722
||||||||| ||||| || ||||| || | | ||||||||||| || |||||
Sbjct 4060 AGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 4004
>seq11797
Length=28381
Score = 536 bits (594), Expect = 2e-147
Identities = 699/972 (72%), Gaps = 6/972 (1%)
Strand=Plus/Plus
Query 103162 AGACTCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTC 103221
|| ||| || |||| ||||| || |||||||||||||| ||||| || ||||| |||||
Sbjct 405 AGCCTCAACAACAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 464
Query 103222 CATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACC 103281
|||||| || ||| ||||| | || || ||||| || || | ||||| || ||||
Sbjct 465 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACT 524
Query 103282 ATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC 103341
||||| | || |||||||| |||||||| || | ||| || ||||| || |||| |||
Sbjct 525 ATCAACTACAGATTGGTTGAAATTGAATCCATTTAAGTTAAATGCCATAGTACTAATACC 584
Query 103342 AAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 103401
| || || ||||| ||||| ||||| || |
Sbjct 585 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 644
Query 103402 GGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTAC 103461
|| |||||||| || |||||||||||||| || || || ||||||||||| |||||
Sbjct 645 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 704
Query 103462 GATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTC 103521
|||||||| || ||||| ||||| ||||| ||||||| | || ||||||| ||||
Sbjct 705 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 764
Query 103522 AGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTG 103580
|| || || | || | | | | || || || | ||||| ||||||||||| || || |
Sbjct 765 TGTGGTTTCCCTGATCAAACTA-GAAGTTACCAAAGAACCATGCATAGCACTAAATAGGG 823
Query 103581 AACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTT 103640
| || ||||| || ||||| || || | |||||| || |||||||| ||||||||||| |
Sbjct 824 AGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTATGCT 883
Query 103641 CGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGG 103700
| || ||||| || | |||| ||||||| || || || || || | ||||||| |||| |
Sbjct 884 CAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAG 943
Query 103701 AGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAG 103760
| || |||||||||| || |||| |||||| ||||| | ||||| ||||||||||
Sbjct 944 AAAAGCTTCCTTGACCAATAGGATAGATCAAGAAAACTGCAGTAGCAGCTGCAACAGGAG 1003
Query 103761 CAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCAC 103820
| || ||||| ||| ||||| || ||||| |||| |||| | | |||||||||||
Sbjct 1004 CTGAATATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCAC 1063
Query 103821 GTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCAC 103880
| |||||||| | | |||| | ||||| | || | |||| |||||||||
Sbjct 1064 GACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCAC 1123
Query 103881 CGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAA 103940
|||| || ||||| ||||||| ||||| ||||||||||| || || || || | ||| |
Sbjct 1124 CGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAATGCAAACCGA 1183
Query 103941 TTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGA 103998
| || || || || |||| || |||||| || || || ||||| ||||| | || ||
Sbjct 1184 TAGC--TGCAGAAGTAGGAATAATTGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 1241
Query 103999 ACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAAC 104058
|||| || ||||||||||| || || ||||| || ||||| || || | || || |
Sbjct 1242 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATAAATGCGAT 1301
Query 104059 GATGAAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAAC 104118
|| || | ||||| | ||| | || |||||||||| ||||| ||||| ||||
Sbjct 1302 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1361
Query 104119 ATAGAGACGGTT 104130
|| ||||||||
Sbjct 1362 GTAAAGACGGTT 1373
>seq14836
Length=433140
Score = 100 bits (110), Expect = 4e-16
Identities = 148/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 102809 ACCACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCG 102868
|| ||||| ||||| ||||| || || || || || ||| | || || | | |||||
Sbjct 174608 ACAACATCAGAAGTAGGGTAAGCTACACAAGTGAGGACATAGCCAGCAGCCATCTGATCA 174549
Query 102869 TCATCCAGAAAG-GATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACA 102927
||||| || || |||| |||| || || | | |||| || ||| |||||||||||
Sbjct 174548 TCATCAAGGAACTGATT-ATCTGTCTGGTCAATATTACCAGACACAACTTTACCAGCACA 174490
Query 102928 AGTAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGC 102987
| ||||| | ||||| ||| || || |||||| |||| || ||||| ||||||||
Sbjct 174489 GCTTGAACAAGAACCAGAACGGCAAGAGAAAGGCAAGTCAATTCCAGCTTCTTCAGCAGC 174430
Query 102988 GTCTAGAATATATTGATCATCCTCACA 103014
||| |||| || ||| || |||||
Sbjct 174429 GTCAAGAACGTAGACATCGTCATCACA 174403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633368588736960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |