Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq17927 547 8e-151 seq11797 536 2e-147 seq14836 100 4e-16 >seq17927 Length=56337 Score = 547 bits (606), Expect = 8e-151 Identities = 733/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 5016 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 4957 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || || || || || || |||||||| ||| Sbjct 4956 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTGTAGAAAGTC 4897 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| ||||||||||| || || ||| Sbjct 4896 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCGCGTAGG 4837 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| ||||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 4836 TTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTACAAAT 4777 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 4776 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 4717 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 4716 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 4657 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || ||||| |||| || || Sbjct 4656 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 4597 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | ||||| | ||| || || ||||||||||| |||||||| | Sbjct 4596 GCGCATAGCAGAGCCGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGTTCAAT 4537 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | |||| ||| || || || |||||||| Sbjct 4536 GTCCAATTATGAAACCCTTGGAAAAAGAGGATAAATCGAAAAATAGCCGCTACACCAAAA 4477 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| || || || || ||||| || || || ||| |||||| Sbjct 4476 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAACAAAA 4417 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || |||||||| || || ||||| || || || | | || | | ||| Sbjct 4416 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCA 4357 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||| ||||| || | || || || ||||||||||| |||||| Sbjct 4356 AGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAAA 4297 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | ||||||||||| |||||||||||||| Sbjct 4296 GTCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAC 4237 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | ||||| | | | | |||||| || || || ||||| || | ||| Sbjct 4236 AGTAACAACAACGAATGCGCTAAACTATTAGCAGGAGTAGAAACCGCAGCGGTTAAAAAA 4177 Query 102550 TTAGCACCTTCAAGGTAACTAG--AC--GCAAGCCCGTGGGTATACCAGGAAGTAGCAAA 102605 || |||||| ||| ||| || || | || || |||||||| ||||| |||| Sbjct 4176 TTGCAACCTTC----TAAATAGGAACTGGCCAATCCATGAGTATACCATGAAGTTACAAA 4121 Query 102606 CGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCC 102665 || || || || | ||| ||||| | || | ||| ||| ||||| || | ||| || Sbjct 4120 GGTTGTACCTGTGAACCAACCCCCTAAAGCAAAATAGGCACAAGGAAAGAGCAATAGACC 4061 Query 102666 AGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 ||||||||| ||||| || ||||| || | | ||||||||||| || ||||| Sbjct 4060 AGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 4004 >seq11797 Length=28381 Score = 536 bits (594), Expect = 2e-147 Identities = 699/972 (72%), Gaps = 6/972 (1%) Strand=Plus/Plus Query 103162 AGACTCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTC 103221 || ||| || |||| ||||| || |||||||||||||| ||||| || ||||| ||||| Sbjct 405 AGCCTCAACAACAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 464 Query 103222 CATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACC 103281 |||||| || ||| ||||| | || || ||||| || || | ||||| || |||| Sbjct 465 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACT 524 Query 103282 ATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC 103341 ||||| | || |||||||| |||||||| || | ||| || ||||| || |||| ||| Sbjct 525 ATCAACTACAGATTGGTTGAAATTGAATCCATTTAAGTTAAATGCCATAGTACTAATACC 584 Query 103342 AAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 103401 | || || ||||| ||||| ||||| || | Sbjct 585 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 644 Query 103402 GGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTAC 103461 || |||||||| || |||||||||||||| || || || ||||||||||| ||||| Sbjct 645 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 704 Query 103462 GATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTC 103521 |||||||| || ||||| ||||| ||||| ||||||| | || ||||||| |||| Sbjct 705 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 764 Query 103522 AGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTG 103580 || || || | || | | | | || || || | ||||| ||||||||||| || || | Sbjct 765 TGTGGTTTCCCTGATCAAACTA-GAAGTTACCAAAGAACCATGCATAGCACTAAATAGGG 823 Query 103581 AACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTT 103640 | || ||||| || ||||| || || | |||||| || |||||||| ||||||||||| | Sbjct 824 AGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTATGCT 883 Query 103641 CGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGG 103700 | || ||||| || | |||| ||||||| || || || || || | ||||||| |||| | Sbjct 884 CAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAG 943 Query 103701 AGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAG 103760 | || |||||||||| || |||| |||||| ||||| | ||||| |||||||||| Sbjct 944 AAAAGCTTCCTTGACCAATAGGATAGATCAAGAAAACTGCAGTAGCAGCTGCAACAGGAG 1003 Query 103761 CAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCAC 103820 | || ||||| ||| ||||| || ||||| |||| |||| | | ||||||||||| Sbjct 1004 CTGAATATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCAC 1063 Query 103821 GTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCAC 103880 | |||||||| | | |||| | ||||| | || | |||| ||||||||| Sbjct 1064 GACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCAC 1123 Query 103881 CGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAA 103940 |||| || ||||| ||||||| ||||| ||||||||||| || || || || | ||| | Sbjct 1124 CGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAATGCAAACCGA 1183 Query 103941 TTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGA 103998 | || || || || |||| || |||||| || || || ||||| ||||| | || || Sbjct 1184 TAGC--TGCAGAAGTAGGAATAATTGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 1241 Query 103999 ACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAAC 104058 |||| || ||||||||||| || || ||||| || ||||| || || | || || | Sbjct 1242 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATAAATGCGAT 1301 Query 104059 GATGAAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAAC 104118 || || | ||||| | ||| | || |||||||||| ||||| ||||| |||| Sbjct 1302 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1361 Query 104119 ATAGAGACGGTT 104130 || |||||||| Sbjct 1362 GTAAAGACGGTT 1373 >seq14836 Length=433140 Score = 100 bits (110), Expect = 4e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 102809 ACCACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCG 102868 || ||||| ||||| ||||| || || || || || ||| | || || | | ||||| Sbjct 174608 ACAACATCAGAAGTAGGGTAAGCTACACAAGTGAGGACATAGCCAGCAGCCATCTGATCA 174549 Query 102869 TCATCCAGAAAG-GATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACA 102927 ||||| || || |||| |||| || || | | |||| || ||| ||||||||||| Sbjct 174548 TCATCAAGGAACTGATT-ATCTGTCTGGTCAATATTACCAGACACAACTTTACCAGCACA 174490 Query 102928 AGTAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGC 102987 | ||||| | ||||| ||| || || |||||| |||| || ||||| |||||||| Sbjct 174489 GCTTGAACAAGAACCAGAACGGCAAGAGAAAGGCAAGTCAATTCCAGCTTCTTCAGCAGC 174430 Query 102988 GTCTAGAATATATTGATCATCCTCACA 103014 ||| |||| || ||| || ||||| Sbjct 174429 GTCAAGAACGTAGACATCGTCATCACA 174403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633368588736960