Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq11797 527 2e-145 >seq11797 Length=28381 Score = 527 bits (584), Expect = 2e-145 Identities = 709/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||||||| || || || |||||||| || || | |||||||| Sbjct 418 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 477 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| ||| |||||||| || || || || | || | | | | | | |||| Sbjct 478 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATCAACTACAGAT 537 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||| ||||| ||||| || ||||| ||| | || | |||| |||| Sbjct 538 TGGTTGAAATTGAATCCATTTAAGTTAAATGCCATAGTACTAATACCTAAAGCAGTAAAC 597 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 ||||||||||| || ||||| || || | |||||||| | | ||| ||||| || || Sbjct 598 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 657 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || |||||||| ||||| |||||||| Sbjct 658 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTT 717 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 ||||| |||||||| || ||||||| | || || | | ||| || || || | Sbjct 718 TCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 777 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| ||| ||||||||| || | || || ||||| Sbjct 778 ATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACA 837 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||| | ||||||||| || ||||||||||| || |||||||||||||| || Sbjct 838 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTATGCTCAGCCTGGAATACA 897 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | |||| ||||||| || || || || || | |||||| |||||||||| || || Sbjct 898 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGA 957 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 |||| ||||| | | ||| || ||||| ||||| || |||||||| || || |||||| Sbjct 958 CCAATAGGATAGATCAAGAAAACTGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1017 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || | || | |||||||||||||| || ||||| ||| | Sbjct 1018 GCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 1077 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || |||| | ||||| | || | |||| | ||||| |||||||| |||||| Sbjct 1078 GCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGCCAT 1137 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | |||||||||||||||||||| || || | ||||| || | | Sbjct 1138 TCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAATGCAAACCGATAGCTGCAGAAGTA 1197 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | || ||||| || || ||||| || || | || || |||| || ||||| Sbjct 1198 GGAATAATTGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCA 1257 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370 || || ||||| || || || || || || ||| ||| |||||||||||| | || Sbjct 1258 CGAATACCATCAATATCTACTGGAGGAGCAGCAATAAATGCGATAATAAAAACGGAAGTT 1317 Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATT 22429 |||| ||| ||| | || ||||| | || || |||||||| | ||||||||||| | Sbjct 1318 GCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 1376 Query 22430 AGTAGAGGTGACCCAGGAACAAAA 22453 ||| ||| | |||| ||| || Sbjct 1377 AGTGCTGGTTATCCAGTTACAGAA 1400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146176206339360