Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 527 2e-145
>seq11797
Length=28381
Score = 527 bits (584), Expect = 2e-145
Identities = 709/984 (72%), Gaps = 2/984 (0%)
Strand=Plus/Plus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || ||||||||||| || || || |||||||| || || | ||||||||
Sbjct 418 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 477
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
|||||||||| ||| |||||||| || || || || | || | | | | | | ||||
Sbjct 478 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATCAACTACAGAT 537
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650
||||| || ||||| ||||| ||||| || ||||| ||| | || | |||| ||||
Sbjct 538 TGGTTGAAATTGAATCCATTTAAGTTAAATGCCATAGTACTAATACCTAAAGCAGTAAAC 597
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710
||||||||||| || ||||| || || | |||||||| | | ||| ||||| || ||
Sbjct 598 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 657
Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770
||||||||||||||||| | || |||||||| || |||||||| ||||| ||||||||
Sbjct 658 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTT 717
Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830
||||| |||||||| || ||||||| | || || | | ||| || || || |
Sbjct 718 TCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 777
Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890
|| | || || |||| ||| ||||||||| || | || || |||||
Sbjct 778 ATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACA 837
Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950
|| || ||||| | ||||||||| || ||||||||||| || |||||||||||||| ||
Sbjct 838 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTATGCTCAGCCTGGAATACA 897
Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010
| |||| ||||||| || || || || || | |||||| |||||||||| || ||
Sbjct 898 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGA 957
Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070
|||| ||||| | | ||| || ||||| ||||| || |||||||| || || ||||||
Sbjct 958 CCAATAGGATAGATCAAGAAAACTGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1017
Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130
||||| || | ||| || | || | |||||||||||||| || ||||| ||| |
Sbjct 1018 GCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 1077
Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190
|| |||| | ||||| | || | |||| | ||||| |||||||| ||||||
Sbjct 1078 GCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGCCAT 1137
Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250
||||||| | |||||||||||||||||||| || || | ||||| || | |
Sbjct 1138 TCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAATGCAAACCGATAGCTGCAGAAGTA 1197
Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310
|||| | || ||||| || || ||||| || || | || || |||| || |||||
Sbjct 1198 GGAATAATTGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCA 1257
Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370
|| || ||||| || || || || || || ||| ||| |||||||||||| | ||
Sbjct 1258 CGAATACCATCAATATCTACTGGAGGAGCAGCAATAAATGCGATAATAAAAACGGAAGTT 1317
Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATT 22429
|||| ||| ||| | || ||||| | || || |||||||| | ||||||||||| |
Sbjct 1318 GCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 1376
Query 22430 AGTAGAGGTGACCCAGGAACAAAA 22453
||| ||| | |||| ||| ||
Sbjct 1377 AGTGCTGGTTATCCAGTTACAGAA 1400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146176206339360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |