Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq11797 535 5e-147 seq17927 376 3e-99 seq14352 118 1e-21 >seq11797 Length=28381 Score = 535 bits (592), Expect = 5e-147 Identities = 720/1000 (72%), Gaps = 2/1000 (0%) Strand=Plus/Plus Query 124033 TGTAGACTCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAAC 124092 || || |||| || ||||||||||| ||||||||||| ||||| | |||||||||||| Sbjct 402 TGGAGCCTCAACAACAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 461 Query 124093 TTCCATACCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTT 124152 ||||||||| | ||| || | ||| | || |||| |||| || | | || | Sbjct 462 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTG 521 Query 124153 AGCATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGAT 124212 | |||||| || |||||||| || ||||| ||||| ||||| |||||||| || | || Sbjct 522 ACTATCAACTACAGATTGGTTGAAATTGAATCCATTTAAGTTAAATGCCATAGTACTAAT 581 Query 124213 ACCCATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACT 124272 ||| | || || ||||| | || ||| || || || | |||| |||||| || | | Sbjct 582 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 641 Query 124273 TCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGC 124332 | || |||||||| |||||| |||||||| | || ||||| ||||| || || || Sbjct 642 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGC 701 Query 124333 TACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTG 124392 ||| |||||||| |||||||||||||| ||||| | ||||| | || || || | Sbjct 702 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 761 Query 124393 CTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAA 124452 ||||| ||||| ||||| | | ||| || || | |||||||||||| || |||| Sbjct 762 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 821 Query 124453 AGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATG 124512 || || ||||| | || ||||| ||| |||||| || || ||||| ||||||||||| Sbjct 822 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTATG 881 Query 124513 CTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATC 124572 ||| || ||||| || | ||| |||||||||||||| ||||| || || ||||||||||| Sbjct 882 CTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 941 Query 124573 AGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGG 124632 ||| || || ||||||| || || | ||||| || || ||||| | || || Sbjct 942 AGAAAAGCTTCCTTGACCAATAGGATAGATCAAGAAAACTGCAGTAGCAGCTGCAACAGG 1001 Query 124633 TGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTG 124692 |||||||| |||||| |||||||||||||| || || | | | |||||||||| Sbjct 1002 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTC 1061 Query 124693 TCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACC 124752 | ||||| || | | ||||| | ||||| | || | | | ||||||||| Sbjct 1062 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1121 Query 124753 ACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCC 124812 ||| || || | |||||||||||| | ||| |||||||| |||||||| || || | || Sbjct 1122 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAATGCAAACC 1181 Query 124813 GATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAA-AG 124871 |||||| || | |||| || |||||| || || || ||||| || || ||||| || Sbjct 1182 GATAGCTGCAGAAGTAGGAATAATTGCACCTGAAATAATATTGTTTCCGTA-AAGAAGAG 1240 Query 124872 AACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAA 124931 | || | || ||||| | || || || ||||| || ||||| || ||||||||||| | Sbjct 1241 ATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATAAATGCGA 1300 Query 124932 CGATGAAACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAA 124991 || ||| | | ||| || | |||| || ||||| | |||||||||||| |||| Sbjct 1301 TAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAA 1360 Query 124992 CATAAATTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 |||| | ||| | || |||| ||| | |||||| Sbjct 1361 TGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1400 >seq17927 Length=56337 Score = 376 bits (416), Expect = 3e-99 Identities = 706/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || || ||||| || || Sbjct 5020 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 4961 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | |||||| || || || ||||| Sbjct 4960 ATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTGTAGAA 4901 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || |||||||| || || | Sbjct 4900 AGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCGCG 4841 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| | |||||||| || | || | || |||| | ||| | || || || Sbjct 4840 TAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTAC 4781 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || ||||| Sbjct 4780 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGA 4721 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 4720 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGC 4661 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| | || ||| || ||||| | || || Sbjct 4660 ACGGAA---TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAAGT 4622 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| || ||||| | || | || |||| || || || Sbjct 4621 ATTTTCTACAGTAGCACCATGAATAGCGCATAGCAGAGCCGCGCCCAGTACACCGGCGAC 4562 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||||||| || || || ||||| | || | |||| | Sbjct 4561 TCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATAAA 4502 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || || || ||||| || || || |||||||||| ||||||||||| Sbjct 4501 TCGAAAAATAGCCGCTACACCAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGG 4442 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || || |||| | || || || || | |||||||||||| ||| || || Sbjct 4441 ATAAATTAGGAAGACAGAAACAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATA 4382 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||||| | ||| || || | |||||||| | | ||| |||||||| | | | Sbjct 4381 AGGTCGCAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGC 4322 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 || | || || | || ||||| |||| ||||| || | ||| |||||||| || Sbjct 4321 GAAAGCGCCGTGGAGAGCAACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAA 4262 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||||||||||||| ||||| || |||| | ||| | | | | |||| Sbjct 4261 ATCTCCTTGTGCTTCAGGACCCCACAGTAACAACAACGAATGCGCTAAACTATTAGCAGG 4202 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || || || || ||||| || || || || | ||| ||| || | ||||| Sbjct 4201 AGTAGAAACCGCAGCGGTTAAAAAATTGCAACCTTCTAAATAGGAACTGGCCAATCCATG 4142 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || ||||| || ||| ||||||||| || | | | ||| || Sbjct 4141 AGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCAAAATAGGC 4082 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || ||||||||||| |||| || || || || || ||| |||||| Sbjct 4081 ACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCA 4022 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || |||||| Sbjct 4021 GTCATCCATAATATCAAA 4004 >seq14352 Length=826827 Score = 118 bits (130), Expect = 1e-21 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||| ||||| |||||||| ||||||| | | || ||||||| || || | ||| Sbjct 398511 CATTGCTTCTGCAGCTGCAGTCCCTTCATCAAGCAACGAGGCGTTTGACATAGGAAGTCC 398452 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 |||||| || || || | ||| ||| |||||| | | ||| | || |||||||| || Sbjct 398451 TGTAAGATCCGTTATCACCGTCTGGAAATTGAGAAGCGATTCAAGCCTCCCCTGAGAGAT 398392 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGC 140036 |||||||||||| ||||| || || |||||| ||||||||| | || ||| ||| Sbjct 398391 CTCAGCTTGATAAGGAGTATACTGAGTATACCAAGCAGGATTCTCCATAATGTTACGC 398334 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || || |||||||| ||||| |||||||| |||| |||||| || || ||||| || Sbjct 399050 TGAGCAGTACAGATGTTGCTGGTAGCTTTGTCCCTTCGAATATGTTGTTCCCTAGTCTGC 398991 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | || | | | || | || ||| ||| |||| || ||| | ||||| | Sbjct 398990 ATAGCCATACGCAAAGCTTGCTTCCCTGAAGAGTCAACACTAAC--ACCAATGATTCTTC 398933 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 |||| ||| ||||||| || | | || || || ||||| || || || || || || | Sbjct 398932 CAGGCATCATTCTCTTGTATTCTTGTGAAGTAGCCAAGAAAGCTGCGTGTGGGCCACCAT 398873 Query 139495 ATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCA 139541 | ||||| |||| |||||||||||| ||| ||| |||||||| Sbjct 398872 AACCCATTGGAACACCAAACCTTTGAGCTGAACCAACAACAATATCA 398826 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 138175 GTTTTGCT--ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAA 138232 || ||||| ||||||||||| || | |||||||| |||||||| || || |||||||| Sbjct 400989 GTGTTGCTTCACACCAATAGGGCCCATACCAGGACCACCACCTCCGTGAGGGATACAGAA 400930 Query 138233 TGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||| || | ||| ||||| || |||||||| ||| Sbjct 400929 GGTCTTGTGGAGATTAAGATGGCAAACATCTGCTCCA 400893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578865867266240