Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq11797 578 5e-160 seq17927 527 8e-145 seq12403 134 2e-26 seq14836 125 1e-23 seq14692 113 6e-20 >seq11797 Length=28381 Score = 578 bits (640), Expect = 5e-160 Identities = 724/993 (73%), Gaps = 0/993 (0%) Strand=Plus/Plus Query 26724 CTCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAA 26783 |||| || |||| || || | || || || || || || | ||| || || || || | Sbjct 408 CTCAACAACAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 467 Query 26784 TCCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATC 26843 ||||| ||||||||| | || || |||||||| || | ||||| || || ||| Sbjct 468 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATC 527 Query 26844 AATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAG 26903 || ||||| || ||||| ||||| || || | || || ||||| || | ||| | Sbjct 528 AACTACAGATTGGTTGAAATTGAATCCATTTAAGTTAAATGCCATAGTACTAATACCTAA 587 Query 26904 TGCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGA 26963 || || ||||| || || || || ||||| || || | |||||| || || ||||| || Sbjct 588 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 647 Query 26964 GTTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGAT 27023 |||||||| |||||||||||||||||| || || || || ||||| || || || || Sbjct 648 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 707 Query 27024 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGT 27083 |||||| || ||||||||||||||||| | ||||| | || || ||| |||| || Sbjct 708 GTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 767 Query 27084 CGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCC 27143 || || | || | ||| || |||| | || ||||||||| || || || || Sbjct 768 GGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCC 827 Query 27144 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGC 27203 |||||||| ||||| ||||| | |||||| || ||||||||||| || || || || || Sbjct 828 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTATGCTCAGC 887 Query 27204 CTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAA 27263 ||||||||||| |||| |||| |||||||||||||| || ||||||||| |||| || || Sbjct 888 CTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 947 Query 27264 AGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGA 27323 |||||||| | |||||||| | ||| |||||| | ||||| || || ||||| || Sbjct 948 GCTTCCTTGACCAATAGGATAGATCAAGAAAACTGCAGTAGCAGCTGCAACAGGAGCTGA 1007 Query 27324 ATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCC 27383 |||||| ||| ||||| ||||||||||| ||||| | |||||||||||||| || Sbjct 1008 ATATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCACGACC 1067 Query 27384 CATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTT 27443 ||||||| | | || | | ||||| | || | |||| ||||||||||||| Sbjct 1068 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTT 1127 Query 27444 ATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGC 27503 || | ||| ||||| | ||||| |||||||| |||||||| || || | |||||| || Sbjct 1128 GTATAGCCATTCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAATGCAAACCGATAGC 1187 Query 27504 ATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGC 27563 ||| | || | || |||||| ||||| || ||||| || || | ||| || |||| Sbjct 1188 TGCAGAAGTAGGAATAATTGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1247 Query 27564 AACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA 27623 ||| |||||||||||||| |||||||| || || || || || || ||||||| ||| || Sbjct 1248 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATAAATGCGATAATAAA 1307 Query 27624 GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAA 27683 | |||||| | || | || |||||||||| ||||| ||||| |||| || | Sbjct 1308 AACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1367 Query 27684 ACGGTTGTTAGTTGATGTCACCCACTCACAGAA 27716 |||||| | ||| || | ||| | |||||| Sbjct 1368 ACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1400 >seq17927 Length=56337 Score = 527 bits (584), Expect = 8e-145 Identities = 730/1019 (72%), Gaps = 2/1019 (0%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | ||| || | |||||| | || |||||| || || | Sbjct 5021 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 4962 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| |||| | || | ||| || | ||||||||| ||||||| Sbjct 4961 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTGTAGA 4902 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | |||||| || ||||| || || || ||||| ||||| || | Sbjct 4901 AAGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCGC 4842 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || | ||| || || | | |||| || | | ||| | ||| | || || | Sbjct 4841 GTAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTA 4782 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||||| Sbjct 4781 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTG 4722 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 ||||||| || || || || ||||| ||||| || || || | ||||| | | || | Sbjct 4721 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAG 4662 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | || || ||||| || ||||||||| | | ||||| || |||||| | |||| Sbjct 4661 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 4602 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 ||||||| | || || || | ||||||| ||| || |||||||||||||| || |||| Sbjct 4601 GAATAGCGCATAGCAGAGCCGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGT 4542 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | | ||||| |||||||| || |||| ||||| | || | ||||| ||||| |||| Sbjct 4541 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATAAATCGAAAAATAGCCGCTACAC 4482 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 | ||||| ||||||||||||||| || || || | ||||| || ||||| ||||| | Sbjct 4481 CAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAA 4422 Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA- 24044 | || |||||||| |||||||| || || || ||||| || || || | | || ||| Sbjct 4421 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAAC-AGAT 4363 Query 24045 CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCA 24104 || || |||||||| |||||||||||||||||||| | ||| || || |||||||||||| Sbjct 4362 CGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCA 4303 Query 24105 ACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGA 24164 ||||| | ||| || || || | ||| ||| || ||| || ||||| | |||||| Sbjct 4302 ACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 4243 Query 24165 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTA 24224 ||||| |||| | | ||||| | | | | |||||| || || || || || || Sbjct 4242 CCCCACAGTAACAACAACGAATGCGCTAAACTATTAGCAGGAGTAGAAACCGCAGCGGTT 4183 Query 24225 AGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACA 24284 | ||| || ||| || | ||||||||| || | |||||| || ||||| || ||| Sbjct 4182 AAAAAATTGCAACCTTCTAAATAGGAACTGGCCAATCCATGAGTATACCATGAAGTTACA 4123 Query 24285 AAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAGT 24344 || | ||| || || | |||||| || | |||| ||| ||| |||| || | || Sbjct 4122 AAGGTTGTACCTGTGAACCAACCCCCTAAAGCAAAATAGGCACAAGGAAAGAGCAATAGA 4063 Query 24345 CCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAA 24403 ||||||||||| ||||| || ||||| |||| | |||||| |||| || ||||| Sbjct 4062 CCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 4004 >seq12403 Length=479826 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 |||||||| | |||| ||| | |||||||||||||||||| || |||||||| || ||| Sbjct 152520 TCTTCTTGATGTGTTTGAATAACAACATCAGAAGTTGGATACGCTACACAAGTAAGAACA 152579 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 | ||||| || || ||||| || || || |||||| ||| || || | ||| Sbjct 152580 TATCCTTCACTCATCTGTTCATCTTCTAAAAAACTCTGATCTGATTGATCAACAGATCCA 152639 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 | || | || ||||||||| |||||| | ||| ||||| || ||||| |||||| Sbjct 152640 GCCACTACTTTCCCTGCACAACTTGAACAAGAACCAGCACGGCACGAGTAAGGCAAATCA 152699 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAGCACA 32847 | ||| |||| || ||||||||||| | || ||||||| |||| Sbjct 152700 AGACCAGCTTCTTCAGCTGCATCAAGAACATAAACATCATCATCACA 152746 >seq14836 Length=433140 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | ||||||||| | |||||||||||| || || || ||||||||||| ||| Sbjct 174629 TCTTCTTTGTGAGTTTCAATGACAACATCAGAAGTAGGGTAAGCTACACAAGTGAGGACA 174570 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 | || | | || ||||||||||| | |||| | ||| | ||||| | ||||| Sbjct 174569 TAGCCAGCAGCCATCTGATCATCATCAAGGAACTGATTATCTGTCTGGTCAATATTACCA 174510 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || |||| ||||| ||||| |||||| | ||| | ||| |||||| | || ||| Sbjct 174509 GACACAACTTTACCAGCACAGCTTGAACAAGAACCAGAACGGCAAGAGAAAGGCAAGTCA 174450 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAGCACA 32847 | ||| |||| || || || ||||| | ||| ||| ||| |||| Sbjct 174449 ATTCCAGCTTCTTCAGCAGCGTCAAGAACGTAGACATCGTCATCACA 174403 >seq14692 Length=404227 Score = 113 bits (124), Expect = 6e-20 Identities = 184/261 (70%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || ||||| ||||| ||| | ||| ||| || || || |||||||| || |||||||| Sbjct 350341 GCAGGAAGTACATGAGAATTCTCTGGGTGGAAGTTGTCGTTTGGACCGTAGAGGTTTGTT 350282 Query 47046 GGCATCAAAGAGATAGCATTAAATCCA-TACTGCTG-ATG--GTATGCCTGACACATCTT 47101 ||||| ||||| |||| ||| | || || || ||| || ||||||||||| Sbjct 350281 GGCATACCGGAGATTGCATC----CCAGTTGTGTTGGATCCTGTAAGCTTGACACATCTT 350226 Query 47102 GATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCAT 47161 || || |||||||| ||||| || || | || || | |||||||| || || | | Sbjct 350225 AATGCCTGCAATCTTAGCAATGGCGTACCACTCGTTTGTTGGTTCAAGTGGTGCAGTGAG 350166 Query 47162 TAGATATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAG 47221 |||| | ||| || ||||| | ||||| || |||||||| || |||||||| Sbjct 350165 TAGAGCTGATTCAGGTATTGGTTGAGGAGCAAATTTGGGGTAAATGCAAGAGGAACCAAG 350106 Query 47222 AAATAAAAGTTTCTTAACACC 47242 || | ||| ||||| ||||| Sbjct 350105 GAAGAGAAGCTTCTTTACACC 350085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665342068331840