Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq16580 123 3e-23 seq17304 104 3e-17 seq14462 104 3e-17 seq15261 87.8 2e-12 >seq16580 Length=224205 Score = 123 bits (136), Expect = 3e-23 Identities = 276/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 || || ||||| ||| | ||||| |||| || | ||||||| |||||| ||| Sbjct 140157 GTAGAGTTTCTGAAGAAGCCCGAAAGATTCACTGCAGTTGGTGCCCGGATCCCAAAAGGT 140098 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| ||||| ||||| | || ||| || || ||| Sbjct 140097 GTTCTCCTTATTGGTCCTCCTGGTACTGGAAAAACCCTTTTGGCAAAAGCTATTGCTGGT 140038 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||||| | | || || ||||||||||||||| Sbjct 140037 GAAGCTGGTGTACCTTTCTTCTCTATCTCTGGTTCCGAGTTCGTTGAGATGTTTGTTGGT 139978 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || |||||| |||||| || ||||| || | | ||| |||||| ||||| ||| Sbjct 139977 GTTGGTGCCTCAAGGGTCCGTGATCTTTTCAAGAAAGCCAAGGAAAATGCTCCATGCATT 139918 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533 ||||| | ||||| || || || || || | ||| | | | || |||| | Sbjct 139917 GTCTTTGTAGATGAAATAGACGCTGTTGGTAGACAAAGAGGAACCGGAATTGGT---GGA 139861 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | ||||| || |||||||| || | ||||| || || || ||||||||||| ||||| Sbjct 139860 GGTAATGATGAAAGAGAACAGACTCTCAATCAGCTCCTGACTGAGATGGATGGGTTTGAG 139801 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | || |||||| | || |||| || || || | | ||||| || || Sbjct 139800 GGTAACACAGGCATTATTGTAGTTGCTGCAACAAACAGAGCAGATATTCTAGA 139748 >seq17304 Length=552903 Score = 104 bits (114), Expect = 3e-17 Identities = 193/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || ||||| || | || |||| | || || ||| || || || ||| Sbjct 425955 CCAGGTACTGGTAAGACTCTTTTAGCTAGAGCTGTAGCTGGAGAAGCAGGAGTACCGTTC 425896 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || | | || |||||| | || |||||||| ||||| || ||| Sbjct 425895 TTCTCTTGTGCAGCGTCCGAGTTCGTGGAGCTTTTCGTTGGTGTAGGTGCGTCTAGAGTT 425836 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | ||| | |||| || || || ||||| ||||| |||||||| Sbjct 425835 AGGGATTTGTTTGAGAAAGCCAAGTCAAAAGCA-CCGTGCATTGTGTTCATAGATGAGAT 425777 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 |||||| || || | || | | ||||| ||| | | | ||||||||||||||| Sbjct 425776 TGATGCTGTTGGAAGACAGAGAGGAGCTGGAATGGGAGG--TGGAAATGACGAGAGAGAG 425719 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||||| |||||||| | | || || |||||||| ||| Sbjct 425718 CAAACGATTAATCAGTTGTTAACAGAAATGGATGGTTTT 425680 >seq14462 Length=746139 Score = 104 bits (114), Expect = 3e-17 Identities = 156/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 || ||| |||| | || ||| ||| ||||| ||| ||||||| |||| ||| | ||| Sbjct 137706 GCAATCGAAACAATCCCGTGTGTTGCCAAGAAAGCGCAATGGGCGATGACTTGGATCGAC 137765 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 | |||| |||| || ||||| | | || || || || || || ||||||||| Sbjct 137766 GGA---TCTCAAACCTTTGCGGAGCGTATCGTAGCCTTCGCCTGCGTTGAAGGTATCTTC 137822 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 |||||||| |||||| | |||| ||| | || || || ||||||||||| || || Sbjct 137823 TTCTCCGGTAGTTTCTGCTCCATTTTCTGGCTTAAAAAACGAGGTCTCATGCCTGGACTC 137882 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216 |||||| || || | || || ||||| || || ||||| Sbjct 137883 ACCTTCTCCAACGAGTTAATCTCACGAGACGAAGGCCTCCA 137923 >seq15261 Length=284138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 269/409 (66%), Gaps = 19/409 (5%) Strand=Plus/Minus Query 177565 AACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGT 177624 |||| | ||| | ||||| ||| | || || || || || ||||| | | || || Sbjct 55328 AACTCCTCCACCGTGTGTGATTCCTCTGTTGCCACCACGTAATCATCTGGTTTCTCCTGC 55269 Query 177625 TGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCG 177684 || | ||| |||||||| || || || |||||| || ||||||||||| || || Sbjct 55268 TGCAACATCAGCCACATTGCCTCTACGTAGTCCCCTGCGAATCCCCAGTCTCTTGCCGCC 55209 Query 177685 TTGAGGTTACCGAGTTCAAGGAACTCTCTCTC---ACCTTTCACAATTTGTTTGAC-GCC 177740 | || || || || | || || || | |||| || || | || ||| Sbjct 55208 TGCAGATTTCCTAGG---AAGACCTTTCGTTGCAAACCTATCTTGATCCTTCCTACTGCC 55152 Query 177741 ATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAG 177800 | || || ||| | || || |||| | || || | ||||| ||||||||||| || Sbjct 55151 CTT-GTTATTTTCCTGGTCACGAAGTTCTCGCCCCGGCGTGGTGACTCGTGGTTGAACAG 55093 Query 177801 GATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGAC---GAGCCAGTG 177857 ||||| |||||| ||| |||||||| |||||||||| ||||| | |||||| Sbjct 55092 TATTCCATTACAGGCAAACAGACCATAGGCTTCTCGGTAA---TTGACTGTGTACCAGTG 55036 Query 177858 AGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTG 177917 ||| || | || ||||| | || |||| || | || || || ||| | || Sbjct 55035 AGCCGCGCACTTAGAGACTGCGTAAGGAGATCTGGGATGAAATGGCGTTGTCTCGGACTG 54976 Query 177918 TGGAGTTTCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 ||||| |||| || | ||||||||||| |||| | ||| ||||| Sbjct 54975 TGGAG----GCGGAGTTGATCCAAACATCTCGGAAGATCCGGCCTGGTA 54931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596433045218560