Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq16580 123 3e-23
seq17304 104 3e-17
seq14462 104 3e-17
seq15261 87.8 2e-12
>seq16580
Length=224205
Score = 123 bits (136), Expect = 3e-23
Identities = 276/413 (67%), Gaps = 6/413 (1%)
Strand=Plus/Minus
Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296
|| || ||||| ||| | ||||| |||| || | ||||||| |||||| |||
Sbjct 140157 GTAGAGTTTCTGAAGAAGCCCGAAAGATTCACTGCAGTTGGTGCCCGGATCCCAAAAGGT 140098
Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356
| || || ||| || ||||| ||||| ||||| | || ||| || || |||
Sbjct 140097 GTTCTCCTTATTGGTCCTCCTGGTACTGGAAAAACCCTTTTGGCAAAAGCTATTGCTGGT 140038
Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416
||| | ||| || ||| || ||||| | | || || |||||||||||||||
Sbjct 140037 GAAGCTGGTGTACCTTTCTTCTCTATCTCTGGTTCCGAGTTCGTTGAGATGTTTGTTGGT 139978
Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476
|| |||||| |||||| || ||||| || | | ||| |||||| ||||| |||
Sbjct 139977 GTTGGTGCCTCAAGGGTCCGTGATCTTTTCAAGAAAGCCAAGGAAAATGCTCCATGCATT 139918
Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533
||||| | ||||| || || || || || | ||| | | | || |||| |
Sbjct 139917 GTCTTTGTAGATGAAATAGACGCTGTTGGTAGACAAAGAGGAACCGGAATTGGT---GGA 139861
Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593
| ||||| || |||||||| || | ||||| || || || ||||||||||| |||||
Sbjct 139860 GGTAATGATGAAAGAGAACAGACTCTCAATCAGCTCCTGACTGAGATGGATGGGTTTGAG 139801
Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646
| | || |||||| | || |||| || || || | | ||||| || ||
Sbjct 139800 GGTAACACAGGCATTATTGTAGTTGCTGCAACAAACAGAGCAGATATTCTAGA 139748
>seq17304
Length=552903
Score = 104 bits (114), Expect = 3e-17
Identities = 193/279 (69%), Gaps = 6/279 (2%)
Strand=Plus/Minus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|||||||| || ||||| || | || |||| | || || ||| || || || |||
Sbjct 425955 CCAGGTACTGGTAAGACTCTTTTAGCTAGAGCTGTAGCTGGAGAAGCAGGAGTACCGTTC 425896
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| || | || | | || |||||| | || |||||||| ||||| || |||
Sbjct 425895 TTCTCTTGTGCAGCGTCCGAGTTCGTGGAGCTTTTCGTTGGTGTAGGTGCGTCTAGAGTT 425836
Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493
| ||| | ||||| | ||| | |||| || || || ||||| ||||| ||||||||
Sbjct 425835 AGGGATTTGTTTGAGAAAGCCAAGTCAAAAGCA-CCGTGCATTGTGTTCATAGATGAGAT 425777
Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551
|||||| || || | || | | ||||| ||| | | | |||||||||||||||
Sbjct 425776 TGATGCTGTTGGAAGACAGAGAGGAGCTGGAATGGGAGG--TGGAAATGACGAGAGAGAG 425719
Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590
||||| |||||||| | | || || |||||||| |||
Sbjct 425718 CAAACGATTAATCAGTTGTTAACAGAAATGGATGGTTTT 425680
>seq14462
Length=746139
Score = 104 bits (114), Expect = 3e-17
Identities = 156/221 (71%), Gaps = 3/221 (1%)
Strand=Plus/Plus
Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055
|| ||| |||| | || ||| ||| ||||| ||| ||||||| |||| ||| | |||
Sbjct 137706 GCAATCGAAACAATCCCGTGTGTTGCCAAGAAAGCGCAATGGGCGATGACTTGGATCGAC 137765
Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115
| |||| |||| || ||||| | | || || || || || || |||||||||
Sbjct 137766 GGA---TCTCAAACCTTTGCGGAGCGTATCGTAGCCTTCGCCTGCGTTGAAGGTATCTTC 137822
Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175
|||||||| |||||| | |||| ||| | || || || ||||||||||| || ||
Sbjct 137823 TTCTCCGGTAGTTTCTGCTCCATTTTCTGGCTTAAAAAACGAGGTCTCATGCCTGGACTC 137882
Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216
|||||| || || | || || ||||| || || |||||
Sbjct 137883 ACCTTCTCCAACGAGTTAATCTCACGAGACGAAGGCCTCCA 137923
>seq15261
Length=284138
Score = 87.8 bits (96), Expect = 2e-12
Identities = 269/409 (66%), Gaps = 19/409 (5%)
Strand=Plus/Minus
Query 177565 AACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGT 177624
|||| | ||| | ||||| ||| | || || || || || ||||| | | || ||
Sbjct 55328 AACTCCTCCACCGTGTGTGATTCCTCTGTTGCCACCACGTAATCATCTGGTTTCTCCTGC 55269
Query 177625 TGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCG 177684
|| | ||| |||||||| || || || |||||| || ||||||||||| || ||
Sbjct 55268 TGCAACATCAGCCACATTGCCTCTACGTAGTCCCCTGCGAATCCCCAGTCTCTTGCCGCC 55209
Query 177685 TTGAGGTTACCGAGTTCAAGGAACTCTCTCTC---ACCTTTCACAATTTGTTTGAC-GCC 177740
| || || || || | || || || | |||| || || | || |||
Sbjct 55208 TGCAGATTTCCTAGG---AAGACCTTTCGTTGCAAACCTATCTTGATCCTTCCTACTGCC 55152
Query 177741 ATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAG 177800
| || || ||| | || || |||| | || || | ||||| ||||||||||| ||
Sbjct 55151 CTT-GTTATTTTCCTGGTCACGAAGTTCTCGCCCCGGCGTGGTGACTCGTGGTTGAACAG 55093
Query 177801 GATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGAC---GAGCCAGTG 177857
||||| |||||| ||| |||||||| |||||||||| ||||| | ||||||
Sbjct 55092 TATTCCATTACAGGCAAACAGACCATAGGCTTCTCGGTAA---TTGACTGTGTACCAGTG 55036
Query 177858 AGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTG 177917
||| || | || ||||| | || |||| || | || || || ||| | ||
Sbjct 55035 AGCCGCGCACTTAGAGACTGCGTAAGGAGATCTGGGATGAAATGGCGTTGTCTCGGACTG 54976
Query 177918 TGGAGTTTCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGCTTGGTA 177965
||||| |||| || | ||||||||||| |||| | ||| |||||
Sbjct 54975 TGGAG----GCGGAGTTGATCCAAACATCTCGGAAGATCCGGCCTGGTA 54931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596433045218560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |