Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq11797 542 3e-149 >seq11797 Length=28381 Score = 542 bits (600), Expect = 3e-149 Identities = 717/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937 || |||| || |||| ||||| ||||||||||| ||||| | ||||||||||||||| Sbjct 405 AGCCTCAACAACAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 464 Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995 |||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | | Sbjct 465 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGCCCTTGA 522 Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055 |||||| || |||||||| || || ||||| || | |||||||||||| || | |||| Sbjct 523 CTATCAACTACAGATTGGTTGAAATTGAATCCATTTAAGTTAAATGCCATAGTACTAATA 582 Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115 || | || ||| ||||||| || ||| || || | | || | |||||| || | | Sbjct 583 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 642 Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174 | | ||||| |||| | ||||| |||||||| |||| ||||| || ||||||||||| Sbjct 643 CGAGAATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGC 701 Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234 ||||| || || || |||||||||||||| || | ||||| | || ||| || | Sbjct 702 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 761 Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 ||| || || || ||||| | | ||| || || |||||||| ||||||||||| || || Sbjct 762 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 821 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| ||| || || || ||||||||||||||||| Sbjct 822 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTATG 881 Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414 ||| || |||||||| | ||||||||| || |||||||| || ||||||||||| ||||| Sbjct 882 CTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 941 Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474 ||| || || ||||||| ||||| | ||||| ||||| |||||| | || || Sbjct 942 AGAAAAGCTTCCTTGACCAATAGGATAGATCAAGAAAACTGCAGTAGCAGCTGCAACAGG 1001 Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTG 8534 ||| |||||| ||| ||||| || | |||||| || ||| | | ||||||| Sbjct 1002 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTC 1061 Query 8535 TCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACC 8594 | |||||| ||| || | |||| | ||||| | | || | | ||| ||||| Sbjct 1062 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1121 Query 8595 TCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCC 8654 ||||| || | ||| ||||| | | |||||||||||||| || || || || || || Sbjct 1122 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAATGCAAACC 1181 Query 8655 AATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGA 8714 ||||| |||| |||| | ||||| || || || |||||||| || | | || Sbjct 1182 GATAGCTGCAGAAGTAGGAATAATTGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 1241 Query 8715 ACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCAC 8774 || | |||||||||||||||||| || ||||| || || ||||||||||||||||| | Sbjct 1242 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATAAATGCGAT 1301 Query 8775 GATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGAC 8834 ||||| | || || | || ||| ||| ||||| | ||| |||||||| || | Sbjct 1302 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1361 Query 8835 ATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||||| | ||| | || || || | ||| Sbjct 1362 GTAAAGACGGTTTTCAGTGCTGGTTATCCA 1391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615721429096640