Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq11797 527 2e-145 >seq11797 Length=28381 Score = 527 bits (584), Expect = 2e-145 Identities = 709/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 || ||| |||| | ||| ||| | ||||||||||| | |||||||| || || | Sbjct 1400 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1341 Query 41294 ATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACC 41352 ||||| || | ||| ||| |||| || | |||||||||||| ||| ||| || || Sbjct 1340 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCC 1282 Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412 || || || || ||||| || || ||||| || |||| || || | || || ||||| Sbjct 1281 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1222 Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472 || || ||||| || | |||| | | || ||||| | || || |||||||| Sbjct 1221 TATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAAT 1162 Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532 |||||||||||| | ||||||||||||| |||||||| ||||| | |||| | || Sbjct 1161 TTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 1102 Query 41533 ATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCG 41592 | ||||| | |||| || | ||| ||||| || |||||||||||||| | || Sbjct 1101 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1042 Query 41593 ACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGC 41652 | || ||| | || ||||| |||||| || || |||||||| || ||||| ||||| Sbjct 1041 TTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 982 Query 41653 TGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGAT 41712 || ||| | | ||||| |||| || || |||||||||| |||||| | || || Sbjct 981 AGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 922 Query 41713 ATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCC 41772 || || || ||||||| |||| | || |||||||||||||| || ||||||||||| || Sbjct 921 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCC 862 Query 41773 TTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGG 41832 ||||||||| | ||||| || || ||||| || || | || ||||||||| || Sbjct 861 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 802 Query 41833 TAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGG 41892 | |||| || || | || | || || || ||| | | || || | || Sbjct 801 TTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 742 Query 41893 TTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGG 41952 ||||| || |||||||| ||||| |||||||| ||||| |||||||| || |||||||| Sbjct 741 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 682 Query 41953 TCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGC 42012 || | ||||||||||||||||| || || ||||| ||| | | |||||||| | || Sbjct 681 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 622 Query 42013 TGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAA 42072 || ||||| || ||||||||||||||| |||| | || | ||| ||||| || || Sbjct 621 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTAA 562 Query 42073 CTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACAC 42132 ||| ||||| ||||| || ||||||||| | | | | | | || | || || || || Sbjct 561 CTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 502 Query 42133 CTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGC 42192 |||||||| ||| |||||||||| |||||||| | || || |||||||| || || || Sbjct 501 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 442 Query 42193 ACACAACTTCCCGCTTGACCTTGC 42216 ||||||||||| || ||||| || Sbjct 441 TCACAACTTCCCTCTAGACCTAGC 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146182604947648