Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq11797 497 3e-136 >seq11797 Length=28381 Score = 497 bits (550), Expect = 3e-136 Identities = 702/984 (71%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||||||||| | || |||||| Sbjct 418 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 477 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | || || || ||| ||||| || Sbjct 478 GCACGGTTAATAATATCAGCCCAAGTAT-TAATAACACGCCCTTGACTATCAACTACAGA 536 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || || ||||||| |||||||||||| || | ||||| | || || | Sbjct 537 TTGGTTGAAATTGAATCCATTTAAGTTAAATGCCATAGTACTAATACCTAAAGCAGTAAA 596 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || |||||||||| || | |||||||| | |||||| || || || Sbjct 597 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 656 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || || |||| ||||| || || || ||||| ||||| || || || Sbjct 657 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGT 716 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 717 TTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 776 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | ||||| |||||| || ||||||||| || || | || ||||| || Sbjct 777 GATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 836 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| ||||| ||| || ||||||||||| || || ||||| || || |||||||| Sbjct 837 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTATGCTCAGCCTGGAATAC 896 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||| ||||| |||||||||||||| || |||||||| |||||| ||| || ||||| Sbjct 897 AATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTG 956 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 || | |||||| | ||||| ||||| ||| || | | || |||| ||||||||| Sbjct 957 ACCAATAGGATAGATCAAGAAAACTGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 1016 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535 | ||||| || | ||| || | | | || |||||||||| | || ||| Sbjct 1017 AGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCCATATAACA 1076 Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595 ||||| || | ||| ||||| | | ||| |||| ||| || || || ||||||||||| Sbjct 1077 AGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGCCA 1136 Query 26596 CTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||||||||| || ||||||||||| | ||||| || ||| | Sbjct 1137 TTCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAATGCAAACCGATAGCTGCAGAAGT 1196 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | ||| ||||| || |||||||||||||| | | || || ||||| || || Sbjct 1197 AGGAATAATTGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTC 1256 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGT 26775 ||| || ||||| |||||||| || || || || || || || | |||||| | ||| Sbjct 1257 ACGAATACCATCAATATCTACTGGAGGAGCAGCAATAAATGCGATAATAAAAACGGAAGT 1316 Query 26776 GGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTC 26835 || | | |||| || ||||| | || || |||||||| | || |||||||| || Sbjct 1317 TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 1376 Query 26836 AGTACTTGTAACCCACTCACAAAA 26859 ||| || || | ||| | ||| || Sbjct 1377 AGTGCTGGTTATCCAGTTACAGAA 1400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147679879287040