Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq11797 538 4e-148 >seq11797 Length=28381 Score = 538 bits (596), Expect = 4e-148 Identities = 707/977 (72%), Gaps = 12/977 (1%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | | | Sbjct 1378 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCG 1319 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| |||| || |||||||| ||||| ||||| ||||||||||||| Sbjct 1318 CAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTC 1259 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || |||| ||| | | || || ||||| || || || ||||| || | | Sbjct 1258 GTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTC 1199 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| || || ||| | || || || || ||||||||||| ||| | |||||| Sbjct 1198 CTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATG 1139 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||| | ||||| |||||||||| |||| | || | ||||| | | || | Sbjct 1138 AATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT-- 1081 Query 155291 CAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGA 155347 ||| | | | |||||| ||||||||||| || |||| | || ||||||||||||| Sbjct 1080 -AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGA 1022 Query 155348 TCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTT 155407 | ||||||||| || || || || | ||||| || || ||| | | |||||| Sbjct 1021 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTA 962 Query 155408 TCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 155467 | |||||||| || ||||||| |||||||| || |||||||||||||| |||| | Sbjct 961 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCA 902 Query 155468 TGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAG 155527 || | || ||||| || || || || || ||||||||||| || |||||| | || |||| Sbjct 901 TGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAG 842 Query 155528 CAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCAC 155587 | ||||| ||||| || || || || ||||||||| ||||| ||||| || ||| Sbjct 841 CTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTT 782 Query 155588 TAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAG 155647 | ||| | ||||| || || | || ||| || | ||||||| ||||| ||||||| Sbjct 781 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAG 722 Query 155648 AAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATG 155707 |||||||||| |||||||| ||||||||||| || || || || | |||||||| |||| Sbjct 721 AAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATG 662 Query 155708 CATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCA 155767 | |||||||| || | | | || |||||| | || || ||||| || || | | Sbjct 661 CTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTA 602 Query 155768 TCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCA 155827 | ||| |||||| | ||| | || |||||||| ||| | || || ||||| |||| Sbjct 601 TTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCA 542 Query 155828 ACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTA 155884 |||| |||||||| || |||| || || || ||| ||||| || ||| ||| Sbjct 541 ACCAATCTGTAGTTGA---TAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTA 485 Query 155885 ACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTG 155944 |||| ||| |||||||||||||| ||||| || ||||| ||||||||||||||||| | Sbjct 484 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAG 425 Query 155945 ACCTTGCTGCTGCTGAG 155961 |||| |||| || |||| Sbjct 424 ACCTAGCTGTTGTTGAG 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584701331222720