Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq11797 580 1e-160 >seq11797 Length=28381 Score = 580 bits (642), Expect = 1e-160 Identities = 732/1002 (73%), Gaps = 18/1002 (2%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| || |||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 405 AGCCTCAACAACAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 464 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 465 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGCCCTTG 521 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| ||||| || || | ||| ||||||||||| | Sbjct 522 ACTATCAACTACAGATTGGTTGAAATTGAATCCATTTAAGTTAAATGCCATAGTACTAAT 581 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 582 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 641 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | || ||||||||| ||||| ||||||||||| || || || || ||||||||||| Sbjct 642 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGC 701 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| ||||||||||| ||||| ||||||| | || || || | Sbjct 702 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 761 Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765 || || ||||| ||||| | | |||||| || | |||||| |||||||||||||| || Sbjct 762 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 821 Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 || || ||||||||||| ||||| || | ||| || |||||||||||||| ||||| || Sbjct 822 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTATG 881 Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885 ||| || ||||| || | |||| |||| ||||||||||| || || |||||||| | || Sbjct 882 CTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 941 Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945 ||| || |||||||| | |||||||| |||||| || || || || | || || Sbjct 942 AGAAAAGCTTCCTTGACCAATAGGATAGATCAAGAAAACTGCAGTAGCAGCTGCAACAGG 1001 Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005 ||| || ||||| ||| ||||||||||||||||| | |||| || ||||||||||| Sbjct 1002 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTC 1061 Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062 |||||| | | | ||| | || | | ||||| | || | |||| |||| Sbjct 1062 ACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG 1118 Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122 ||||| || || | ||| ||||| | | ||| |||||||| || || || || || | Sbjct 1119 ACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAATGCAA 1178 Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182 |||||| || ||| |||||| || ||||| ||||| || ||||| ||||| | || Sbjct 1179 ACCGATAGCTGCAGAAGTAGGAATAATTGCACCTGAAATAATATTGTTTCCGTAAAGAAG 1238 Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242 || || | ||||||||| | |||||||| ||||| |||||||| || ||||| ||||| Sbjct 1239 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATAAATGC 1298 Query 68243 AATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCA 68299 || || || | |||| ||| | | ||| ||| |||||||| ||||| ||||| Sbjct 1299 GATAATAAAAACGGAAGT---TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 1355 Query 68300 ACCAACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 |||| || | || || ||| ||| | ||||||||| Sbjct 1356 TCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 1397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566817425785920