Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq11797 672 0.0 seq17927 596 2e-165 seq11514 89.7 6e-13 >seq11797 Length=28381 Score = 672 bits (744), Expect = 0.0 Identities = 735/974 (75%), Gaps = 2/974 (0%) Strand=Plus/Plus Query 67833 CTCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCAT 67892 |||| || |||| ||||| |||||||||||||| || ||||| ||||||||||||||||| Sbjct 408 CTCAACAACAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 467 Query 67893 ACCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATC 67952 ||| | ||| ||||| | || || ||||| ||| | ||| || |||||| Sbjct 468 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATC 527 Query 67953 AAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAG 68012 || | ||| |||||||| ||||| ||||| | ||| |||||||| || |||| ||| | Sbjct 528 AACTACAGATTGGTTGAAATTGAATCCATTTAAGTTAAATGCCATAGTACTAATACCTAA 587 Query 68013 TGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGA 68072 ||||| ||||| ||||| || || ||||| || || | |||||| || | ||||| || Sbjct 588 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 647 Query 68073 GTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAAT 68132 |||||||| ||||| |||||||||| || || || || ||||| ||||| ||||| Sbjct 648 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 707 Query 68133 GTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGT 68192 ||||||||| ||||||||||||||||| ||||||| | || || ||| |||| || Sbjct 708 GTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 767 Query 68193 GGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCC 68252 |||||| | | || |||||| |||| ||||||||||| ||||| || || || || Sbjct 768 GGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCC 827 Query 68253 ACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 68312 || ||||| ||||| || || | ||| || || |||||||| || ||||| ||||| || Sbjct 828 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTATGCTCAGC 887 Query 68313 TTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAA 68372 ||||| || | |||| |||||||||||||||| || || |||||||| | ||||| || Sbjct 888 CTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 947 Query 68373 CGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGA 68432 |||||||| | |||||||| || ||| ||||| | || ||||||||||| || || Sbjct 948 GCTTCCTTGACCAATAGGATAGATCAAGAAAACTGCAGTAGCAGCTGCAACAGGAGCTGA 1007 Query 68433 GTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCC 68492 ||||||||| ||||||||||||||||| | ||| | ||||||||| ||||| || Sbjct 1008 ATATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCACGACC 1067 Query 68493 CATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATT 68552 ||| || | | ||||| | ||||| | | | |||| |||||||||| || Sbjct 1068 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTT 1127 Query 68553 GTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGC 68612 ||| | ||| ||||||| || ||| ||||||||||| || ||||| || | ||| || || Sbjct 1128 GTATAGCCATTCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAATGCAAACCGATAGC 1187 Query 68613 ATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGC 68672 ||| |||||| || ||||| ||||| || ||||| || || ||||| || |||| Sbjct 1188 TGCAGAAGTAGGAATAATTGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1247 Query 68673 AACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA 68732 ||||||||||||||||||||| || || || || |||||||| || || |||| || || Sbjct 1248 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATAAATGCGATAATAAA 1307 Query 68733 ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAA 68791 | | ||||| | ||| || ||||||||||||| || || ||||| |||| ||||| Sbjct 1308 AACGGAAGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCAAACCATCCAATGTAAA 1366 Query 68792 GGCGGTTCTCTGTG 68805 | ||||| || ||| Sbjct 1367 GACGGTTTTCAGTG 1380 >seq17927 Length=56337 Score = 596 bits (660), Expect = 2e-165 Identities = 738/1007 (73%), Gaps = 2/1007 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || | Sbjct 5021 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 4962 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| |||||| || || ||||| || || ||||||| Sbjct 4961 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTGTAGA 4902 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || ||||| ||||||||||| || | Sbjct 4901 AAGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCGC 4842 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| | ||| ||||| | | || | | ||| |||| | ||| | || || | Sbjct 4841 GTAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTA 4782 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || | Sbjct 4781 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTG 4722 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| || || |||||||| ||||||||||| ||||||| | || || | Sbjct 4721 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAG 4662 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| |||||||||||| | | |||||| ||||| ||| |||||| Sbjct 4661 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 4602 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | |||| || | ||||| | ||| || || |||||||||||||| |||| Sbjct 4601 GAATAGCGCATAGCAGAGCCGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGT 4542 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| ||||| ||||| || ||||| | ||||| | |||||||| || || | || | Sbjct 4541 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATAAATCGAAAAATAGCCGCTACAC 4482 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| |||||||| || || || || || |||||| || Sbjct 4481 CAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAA 4422 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 |||||||||| || ||||||||||| || || ||||| || || || | | || ||| Sbjct 4421 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGAT 4363 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || |||||||| || || | ||| ||||| |||| |||||||| |||||||| || Sbjct 4362 CGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCA 4303 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| |||| || || || | ||| ||| || ||||| || || | |||||| Sbjct 4302 ACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 4243 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| |||| | | ||||| | | | || |||||| || || || || || || Sbjct 4242 CCCCACAGTAACAACAACGAATGCGCTAAACTATTAGCAGGAGTAGAAACCGCAGCGGTT 4183 Query 67425 AGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGACA 67484 | |||||| ||| || | ||| | || | ||| ||||| ||||| || ||| Sbjct 4182 AAAAAATTGCAACCTTCTAAATAGGAACTGGCCAATCCATGAGTATACCATGAAGTTACA 4123 Query 67485 AACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAGT 67544 || || ||||| || | ||| || || | || | ||| ||| ||||| || | ||| Sbjct 4122 AAGGTTGTACCTGTGAACCAACCCCCTAAAGCAAAATAGGCACAAGGAAAGAGCAATAGA 4063 Query 67545 CCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 ||||||||||| ||||| || ||||| || | | ||||||||| Sbjct 4062 CCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATC 4016 >seq11514 Length=7346 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||| |||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 1422 CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGCTCTACCACTG 1363 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 1362 AGCTACTGAGGA 1351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571923456747840