Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq14413 134 2e-26 seq14499 123 4e-23 seq16577 118 2e-21 seq17130 100 5e-16 >seq14413 Length=739167 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||||||| ||||| |||| || | || | || || || || Sbjct 402844 AATTTGCATACCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTT 402903 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| | || || | | ||| || | ||||| ||||| || || | |||||| || Sbjct 402904 GTAGTCAGCTAGAGTACGACCATCCTCGAGCTGTTTACCGGCGAAGATAAGTCTCTGCTG 402963 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || || ||||||||||| || || | ||| | ||| ||| || || || Sbjct 402964 GTCCGGAGGGATACCCTCTTTATCTTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGA 403023 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||||| || || |||||||| || || ||||| ||||| |||||||| Sbjct 403024 GCTCTCAACTTCTAGGGTGATGGTTTTACCAGTGAGAGTTTTCACAAAGATTTGCAT 403080 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| || ||||| | ||| | ||| || || || ||||| Sbjct 402623 ATACCACCACGGAGACGAAGCACAAGATGGAGTGTGGACTCCTTTTGGATGTTGTAGTCA 402682 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| |||| ||||| |||||||| || | |||||| || || ||| Sbjct 402683 GCAAGGGTACGGCCATCTTCTAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGA 402742 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| ||||| || || | ||| | ||| ||| || |||||| |||| Sbjct 402743 GGGATTCCTTCTTTGTCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCGGAACTCTCA 402802 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||| ||| || ||||| || || || || |||||||| |||||||| Sbjct 402803 ACCTCTAAAGTGATGGTTTTGCCGGTAAGGGTCTTTACAAAAATTTGCAT 402852 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||| ||||| || || | || || || ||||| || || || || ||||| || Sbjct 402479 TGTTTTCCTGCAAAGATCAAACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAATC 402538 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||||| ||| ||| || || || ||||||||||||||| || ||||| || Sbjct 402539 TTAGCTTTTACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGAGTGATGGTTTTGCCG 402598 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || |||||||| || ||||| Sbjct 402599 GTAAGGGTCTTTACAAAAATCTGCAT 402624 >seq14499 Length=662897 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| || | ||| |||| || | || | ||| || ||||| Sbjct 223928 ATTTGCATACCACCTCTTAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTG 223987 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| ||| || | ||| || | |||||| || || || || | |||||| ||| Sbjct 223988 TAATCGGCTAAGGTACGGCCATCTTCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGA 224047 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| |||||||| || ||||| || || | ||| | ||| || || || || Sbjct 224048 TCTGGAGGAATTCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCGATGGTGTCTGAG 224107 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || ||||| || ||||| || || || |||||||| || |||||||| Sbjct 224108 CTCTCAACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 224163 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||| | || | |||||| ||||||||| || | | || | | Sbjct 223037 CGAAGAACAAGATGAAGAGTCGACTCTTTCTGAATATTATAATCAGCAAGAGTCCGGCCA 223096 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||||| || || |||||||| || || || || || ||||||||| Sbjct 223097 TCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCTTCTTTA 223156 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| ||||||||| || |||||||||| || || Sbjct 223157 TCTTGGATCTTTGCTTTCACATTATCAATAGTATCCGAGCTTTCAACTTCTAATGTAATG 223216 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || | || || ||||| || ||||| Sbjct 223217 GTTTTACCGGTCAATGTCTTAACAAAAATCTGCAT 223251 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || ||||| || | || | ||| || ||||| ||||| Sbjct 223250 ATACCACCACGGAGACGCAGGACCAGGTGAAGAGTTGACTCCTTTTGTATATTGTAGTCA 223309 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | ||| || | ||| || | ||||||||||| || || | ||| || || || || Sbjct 223310 GCTAAGGTACGGCCATCTTCAAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGT 223369 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || || | ||||| ||| || || ||||| ||| Sbjct 223370 GGGATACCTTCTTTGTCTTGGATCTTAGCTTTTACATTATCGATGGTGTCGGAGCTTTCA 223429 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||| || || |||||||| ||||| ||||| || || || ||||| Sbjct 223430 ACTTCTAATGTGATGGTTTTACCGGTTAGGGTTTTGACGAAAATCTGCAT 223479 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| || |||||||| | ||| | || | || || || || ||||| Sbjct 223706 ATACCACCTCTTAAACGAAGTACTAAATGAAGGGTTGATTCCTTTTGGATGTTGTAGTCT 223765 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | || || | ||||| || || || || | ||| |||||||| || Sbjct 223766 GCAAGGGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGATCTGGT 223825 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || || | || | || ||| || || || ||| Sbjct 223826 GGGATCCCTTCTTTGTCTTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCG 223885 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||| || || || ||||| || || |||||||| Sbjct 223886 ACTTCTAGGGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCAT 223935 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || ||||| || | ||| | ||| || |||||| || || Sbjct 223478 ATACCACCACGAAGACGCAGGACCAGGTGAAGTGTTGACTCCTTCTGAATATTGTAATCA 223537 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | ||||||||||| || || | ||||| || || || Sbjct 223538 GCAAGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGT 223597 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || || | |||| ||| || || || || ||| Sbjct 223598 GGGATACCTTCTTTGTCTTGGATCTTAGCCTTTACATTATCGATGGTGTCTGAGCTTTCA 223657 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | |||||| ||||| || || || ||||| || || || ||||| Sbjct 223658 ACTTCCAAAGTTATGGTTTTGCCAGTAAGGGTTTTGACGAAAATCTGCAT 223707 >seq16577 Length=433012 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||| || ||||| || | || ||||| || || |||||||||||| Sbjct 33699 TCTTCGAGTTGTTTTCCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTA 33758 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 33759 TCCTGAATCTTGGCTTTGACATTGTCGATTGTATCTGATGATTCGACTTCAAGAGTTATC 33818 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||||| ||||| ||||| || || || ||||| || Sbjct 33819 GTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 33856 >seq17130 Length=165301 Score = 100 bits (110), Expect = 5e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| || || | ||| || || || |||| |||||||||||| |||||||| | Sbjct 19712 ATATTGTAATCAGCTAATGTCCTGCCGTCTTCTAGTTGTTTTCCGGCGAAAATTAACCGT 19771 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || || ||||| || ||||| || || | ||| | ||| || ||| Sbjct 19772 TGCTGGTCCGGTGGGATACCTTCCTTGTCTTGGATCTTCGATTTGACATTGTCGATTGTA 19831 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || || ||||| || || || || ||||| || || || ||||| || || || ||| Sbjct 19832 TCAGATGATTCAACCTCAAGGGTGATTGTTTTCCCCGTGAGAGTTTTCACGAAGATCTGC 19891 Query 193359 ATTTTATT 193366 || || || Sbjct 19892 ATCTTCTT 19899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899448469107840