Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq14499 147 3e-30 seq16023 89.7 8e-13 seq14413 87.8 3e-12 seq17130 84.2 3e-11 >seq14499 Length=662897 Score = 147 bits (162), Expect = 3e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| |||||||| || ||||| |||||||||||||| ||| || Sbjct 223251 ATGCAGATTTTTGTTAAGACATTGACCGGTAAAACCATTACATTAGAAGTTGAAAGCTCG 223192 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| || || |||||||||||||| || || || || || Sbjct 223191 GATACTATTGATAATGTGAAAGCAAAGATCCAAGATAAAGAAGGTATCCCACCGGACCAG 223132 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||||| || ||||| |||||| | | ||| | | ||||||||| Sbjct 223131 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACTCTTGCTGATTATAAT 223072 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| |||| |||||| Sbjct 223071 ATTCAGAAAGAGTCGACTCTTCAT 223048 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || || ||||| || || |||||||||| ||| Sbjct 223935 ATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTCT 223876 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || ||||| |||||||| || || ||||| ||| Sbjct 223875 GACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAAGGGATCCCACCAGATCAA 223816 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | || ||||| |||||||| || | || | |||| || || Sbjct 223815 CAAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTACAAC 223756 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| || | || ||||||||||| | | |||||||| ||| Sbjct 223755 AT--CCAAAAGGAATCAACCCTTCATTTAGTACTTCGTTTAAGAGGTGGT 223708 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || || ||||| || ||||||||||| ||| || Sbjct 223479 ATGCAGATTTTCGTCAAAACCCTAACCGGTAAAACCATCACATTAGAAGTTGAAAGCTCC 223420 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||| || ||||| |||||||| || || ||||| || Sbjct 223419 GACACCATCGATAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 223360 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||||| || ||||| |||||| | | || ||| | || || ||| Sbjct 223359 CAAAGACTCATCTTCGCCGGAAAACAGCTTGAAGATGGCCGTACCTTAGCTGACTACAAT 223300 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 ||| || ||| | || ||||| Sbjct 223299 ATACAAAAGGAGTCAACTCTTCA 223277 >seq16023 Length=121467 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||| ||||| || || || || || || || || ||| || Sbjct 25297 ATGCAAATCTTCGTTAAAACCTTGACGGGCAAGACCATCACCTTGGAGGTGGAAAGCTCC 25238 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| ||| || || ||||| || || || || || || || || Sbjct 25237 GATACCATCGACAACGTTAAAGCAAAGATCCAAGACAAGGAGGGAATCCCCCCGGACCAG 25178 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| ||||||||||| ||| | ||| || | ||||| || Sbjct 25177 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGTACTCTAGCTGATTACAAC 25118 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || ||||| || || || Sbjct 25117 ATCCAGAAGGAGTCAACCCTTCACTTGGTCTT 25086 >seq14413 Length=739167 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||| ||||| || || ||||||| || || Sbjct 403080 ATGCAAATCTTTGTGAAAACTCTCACTGGTAAAACCATCACCCTAGAAGTTGAGAGCTCA 403021 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||| || ||||||||||| || || ||||| || || Sbjct 403020 GACACCATTGACAATGTCAAAGCTAAGATTCAAGATAAAGAGGGTATCCCTCCGGACCAG 402961 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||| | || | |||||||| |||||||| ||| Sbjct 402960 CAGAGACTTATCTTCGCCGGTAAACAGCTCGAGGAT 402925 >seq17130 Length=165301 Score = 84.2 bits (92), Expect = 3e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || ||||| || || | ||||| | || || ||||| || || | || || ||| Sbjct 19899 AAGAAGATGCAGATCTTCGTGAAAACTCTCACGGGGAAAACAATCACCCTTGAGGTTGAA 19840 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||||||| || || || ||| || || ||||| || ||||| || || || Sbjct 19839 TCATCTGATACAATCGACAATGTCAAATCGAAGATCCAAGACAAGGAAGGTATCCCACCG 19780 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || || ||| | || |||| ||||| || || || ||||| ||| || ||| | ||| Sbjct 19779 GACCAGCAACGGTTAATTTTCGCCGGAAAACAACTAGAAGACGGCAGGACATTAGCTGAT 19720 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAA 156055 || ||||| || || | || ||||||||||| | | |||||||| || | ||| Sbjct 19719 TACAATATCCAGAAGGAATCAACTCTTCATTTAGTTCTCCGTTTAAGAGGAGGAGCAAA 19661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731704474499200