Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq14499 147 3e-30
seq16023 89.7 8e-13
seq14413 87.8 3e-12
seq17130 84.2 3e-11
>seq14499
Length=662897
Score = 147 bits (162), Expect = 3e-30
Identities = 155/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| |||| |||||||| || ||||| |||||||||||||| ||| ||
Sbjct 223251 ATGCAGATTTTTGTTAAGACATTGACCGGTAAAACCATTACATTAGAAGTTGAAAGCTCG 223192
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| |||| || |||||| || || |||||||||||||| || || || || ||
Sbjct 223191 GATACTATTGATAATGTGAAAGCAAAGATCCAAGATAAAGAAGGTATCCCACCGGACCAG 223132
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||| | ||||| || ||||| |||||| | | ||| | | |||||||||
Sbjct 223131 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACTCTTGCTGATTATAAT 223072
Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026
|| |||||| |||| ||||||
Sbjct 223071 ATTCAGAAAGAGTCGACTCTTCAT 223048
Score = 98.7 bits (108), Expect = 1e-15
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | ||||| | || || ||||| || || |||||||||| |||
Sbjct 223935 ATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTCT 223876
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| || ||| || ||||| |||||||| || || ||||| |||
Sbjct 223875 GACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAAGGGATCCCACCAGATCAA 223816
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||| | || | || ||||| |||||||| || | || | |||| || ||
Sbjct 223815 CAAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTACAAC 223756
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| ||||| || | || ||||||||||| | | |||||||| |||
Sbjct 223755 AT--CCAAAAGGAATCAACCCTTCATTTAGTACTTCGTTTAAGAGGTGGT 223708
Score = 96.9 bits (106), Expect = 5e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | ||||| | || || ||||| || ||||||||||| ||| ||
Sbjct 223479 ATGCAGATTTTCGTCAAAACCCTAACCGGTAAAACCATCACATTAGAAGTTGAAAGCTCC 223420
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || ||| ||| || ||||| |||||||| || || ||||| ||
Sbjct 223419 GACACCATCGATAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 223360
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||| | || | ||||| || ||||| |||||| | | || ||| | || || |||
Sbjct 223359 CAAAGACTCATCTTCGCCGGAAAACAGCTTGAAGATGGCCGTACCTTAGCTGACTACAAT 223300
Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025
||| || ||| | || |||||
Sbjct 223299 ATACAAAAGGAGTCAACTCTTCA 223277
>seq16023
Length=121467
Score = 89.7 bits (98), Expect = 8e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || ||||||| ||||| || || || || || || || || ||| ||
Sbjct 25297 ATGCAAATCTTCGTTAAAACCTTGACGGGCAAGACCATCACCTTGGAGGTGGAAAGCTCC 25238
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || ||||| ||| || || ||||| || || || || || || || ||
Sbjct 25237 GATACCATCGACAACGTTAAAGCAAAGATCCAAGACAAGGAGGGAATCCCCCCGGACCAG 25178
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | |||||| ||||||||||| ||| | ||| || | ||||| ||
Sbjct 25177 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGTACTCTAGCTGATTACAAC 25118
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034
|| || ||| | || ||||| || || ||
Sbjct 25117 ATCCAGAAGGAGTCAACCCTTCACTTGGTCTT 25086
>seq14413
Length=739167
Score = 87.8 bits (96), Expect = 3e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | ||||| | ||||| ||||| || || ||||||| || ||
Sbjct 403080 ATGCAAATCTTTGTGAAAACTCTCACTGGTAAAACCATCACCCTAGAAGTTGAGAGCTCA 403021
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || ||| ||| || ||||||||||| || || ||||| || ||
Sbjct 403020 GACACCATTGACAATGTCAAAGCTAAGATTCAAGATAAAGAGGGTATCCCTCCGGACCAG 402961
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
|| ||| | || | |||||||| |||||||| |||
Sbjct 402960 CAGAGACTTATCTTCGCCGGTAAACAGCTCGAGGAT 402925
>seq17130
Length=165301
Score = 84.2 bits (92), Expect = 3e-11
Identities = 162/239 (68%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876
|| || ||||| || || | ||||| | || || ||||| || || | || || |||
Sbjct 19899 AAGAAGATGCAGATCTTCGTGAAAACTCTCACGGGGAAAACAATCACCCTTGAGGTTGAA 19840
Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936
||||||| || || || ||| || || ||||| || ||||| || || ||
Sbjct 19839 TCATCTGATACAATCGACAATGTCAAATCGAAGATCCAAGACAAGGAAGGTATCCCACCG 19780
Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996
|| || ||| | || |||| ||||| || || || ||||| ||| || ||| | |||
Sbjct 19779 GACCAGCAACGGTTAATTTTCGCCGGAAAACAACTAGAAGACGGCAGGACATTAGCTGAT 19720
Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAA 156055
|| ||||| || || | || ||||||||||| | | |||||||| || | |||
Sbjct 19719 TACAATATCCAGAAGGAATCAACTCTTCATTTAGTTCTCCGTTTAAGAGGAGGAGCAAA 19661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731704474499200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |