Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq14499 152 1e-31 seq16938 116 7e-21 seq14413 113 9e-20 seq16577 111 3e-19 >seq14499 Length=662897 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || | ||| | ||| | |||||| ||||||||||||| Sbjct 223025 CCACCACGAAGACGAAGAACAAGATGAAGAGTCGACTCTTTCTGAATATTATAATCAGCA 223084 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| || | ||||| || || ||||| |||||||| || || ||||| Sbjct 223085 AGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 223144 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||||||||| || || ||| |||||| |||| ||| || ||| ||| Sbjct 223145 ATACCTTCTTTATCTTGGATCTTTGCTTTCACATTATCAATAGTATCCGAGCTTTCAACT 223204 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| |||||||||||||| || ||||| |||| ||| |||||||| Sbjct 223205 TCTAATGTAATGGTTTTACCGGTCAATGTCTTAACAAAAATCTGCAT 223251 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAA-TACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 ||||||||||| | || ||| || || |||| ||| | ||| || |||||| ||||| Sbjct 223934 ATACCACCTCTTA-ACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATC 223992 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | ||| || || |||| || | |||||| || || ||||| | |||||| ||||| || Sbjct 223993 GGCTAAGGTACGGCCATCTTCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGG 224052 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||| || ||||| || || ||| |||||| || | ||||| || Sbjct 224053 AGGAATTCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCGATGGTGTCTGAGCTCTC 224112 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| ||||| | ||||| | || || ||||| Sbjct 224113 AACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 224163 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | || | ||| | ||| || ||||| || ||| Sbjct 223250 ATACCACCACGGAGACGCAGGACCAGGTGAAGAGTTGACTCCTTTTGTATATTGTAGTCA 223309 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || || |||| || | ||||| || || ||||| | ||| || || || ||| Sbjct 223310 GCTAAGGTACGGCCATCTTCAAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGT 223369 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || ||| |||||||||| || | || || ||| Sbjct 223370 GGGATACCTTCTTTGTCTTGGATCTTAGCTTTTACATTATCGATGGTGTCGGAGCTTTCA 223429 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || ||||||||||| |||| ||||| | || |||||||| Sbjct 223430 ACTTCTAATGTGATGGTTTTACCGGTTAGGGTTTTGACGAAAATCTGCAT 223479 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | ||| | ||||||||| | || | || || ||| || || || Sbjct 223706 ATACCACCTCTTAAACGAAGTACTAAATGAAGGGTTGATTCCTTTTGGATGTTGTAGTCT 223765 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || || | ||||||||||| ||||| | ||| |||||||| ||| Sbjct 223766 GCAAGGGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGATCTGGT 223825 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || ||| || || || || | || || || Sbjct 223826 GGGATCCCTTCTTTGTCTTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCG 223885 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || |||||||| || || | ||||| | || || ||||| Sbjct 223886 ACTTCTAGGGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCAT 223935 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| || | | | |||| ||| | || | ||| ||| || ||||| ||||| Sbjct 224162 ATACCACCCCTCAACCTGAGAACTAGATGGAGGGTTGACTCCTTTTGA-ATATTGTAATC 224220 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | ||| || || |||| || | ||||| || || ||||| | |||||| || || || Sbjct 224221 GGCTAAGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGG 224280 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||| || ||||| || || || |||||| || | || || || Sbjct 224281 AGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTCTC 224340 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| || ||||| | ||||| | || || ||||| Sbjct 224341 CACCTCGAGAGTAATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 224391 >seq16938 Length=276168 Score = 116 bits (128), Expect = 7e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||||||| | || |||| ||| | ||||| |||||| ||| || ||||| | Sbjct 249791 CCACCTCTAAGCCTCAAGACTAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCA 249732 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| | |||| || | ||| ||||| |||||||| | ||||||||||||||||||| Sbjct 249731 AGTGTTCTTCCATCTTCTAGTTGCTTACCCGCAAAGATGAGTCTCTGTTGATCAGGTGGT 249672 Query 192430 ATTCCTTCTTTATCTTGTA 192448 || || ||||| || |||| Sbjct 249671 ATACCCTCTTTGTCCTGTA 249653 Score = 107 bits (118), Expect = 4e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||||||| | || |||| ||| | ||||| ||||| ||| || ||||| | Sbjct 257029 CCACCTCTAAGCCTCAAGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAATCGGCA 257088 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || | ||| ||||| |||||||| | ||||||||||||||||||| Sbjct 257089 AGTGTTCTGCCATCTTCTAGTTGCTTACCGGCAAAGATGAGTCTCTGTTGATCAGGTGGT 257148 Query 192430 ATTCCTTCTTTATCTTGTA 192448 || || ||||| || |||| Sbjct 257149 ATACCCTCTTTGTCCTGTA 257167 >seq14413 Length=739167 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | ||| | || || || | || | || || ||| || || ||| Sbjct 402851 ATACCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 402910 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | |||||||| || ||||| | |||||| || || || Sbjct 402911 GCTAGAGTACGACCATCCTCGAGCTGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGA 402970 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||||||||| || ||| ||| ||||| || | ||||| || Sbjct 402971 GGGATACCCTCTTTATCTTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCA 403030 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || |||||||||||||| | ||||| | ||| || ||||| Sbjct 403031 ACTTCTAGGGTGATGGTTTTACCAGTGAGAGTTTTCACAAAGATTTGCAT 403080 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || | || | ||| | ||| || ||| || || || Sbjct 403079 ATACCACCACGAAGACGAAGGACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCT 403138 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || || |||| || | ||||||||| |||||||||| ||| || || || || Sbjct 403139 GCTAAAGTACGGCCATCCTCAAGTTGTTTACCGGCAAAGATTAGTCTTTGCTGGTCCGGA 403198 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || || || || || || |||||| || | || || || Sbjct 403199 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTCTCC 403258 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || |||||||||||||| | || || | ||| || ||||| Sbjct 403259 ACCTCTAGGGTGATGGTTTTACCAGTGAGAGTCTTGACAAAGATTTGCAT 403308 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | ||| | || | ||| || ||| || || ||| Sbjct 402623 ATACCACCACGGAGACGAAGCACAAGATGGAGTGTGGACTCCTTTTGGATGTTGTAGTCA 402682 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | |||||||| |||||||| | |||||| || || || Sbjct 402683 GCAAGGGTACGGCCATCTTCTAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGA 402742 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || ||| ||| ||||| || | || || || Sbjct 402743 GGGATTCCTTCTTTGTCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCGGAACTCTCA 402802 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||| |||||||| || || | || || | ||| || ||||| Sbjct 402803 ACCTCTAAAGTGATGGTTTTGCCGGTAAGGGTCTTTACAAAAATTTGCAT 402852 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||| || | || | ||| | || || || || ||||| Sbjct 402395 ATACCACCACGGAGACGTAGCACCAGGTGAAGAGTTGATTCCTTCTGAATGTTGTAATCT 402454 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | ||||| || |||||||| || | || || || || Sbjct 402455 GCAAGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGCTGGTCCGGA 402514 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || ||| ||||||||| || | ||||| || Sbjct 402515 GGAATACCCTCCTTGTCTTGAATCTTAGCTTTTACATTGTCAATGGTGTCTGAGCTCTCA 402574 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||||| |||||||| || || | || || | ||| |||||||| Sbjct 402575 ACTTCTAGAGTGATGGTTTTGCCGGTAAGGGTCTTTACAAAAATCTGCAT 402624 >seq16577 Length=433012 Score = 111 bits (122), Expect = 3e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||| | | || || | || || | |||||| ||||| || || || | Sbjct 33671 GATGTTGTAATCGGCAAGAGTACGACCGTCTTCGAGTTGTTTTCCAGCGAAAATCAAACG 33730 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || ||||| ||||| |||||||||||||| || || || ||| ||||| || | Sbjct 33731 TTGCTGATCCGGTGGAATTCCTTCTTTATCCTGAATCTTGGCTTTGACATTGTCGATTGT 33790 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 |||||| ||||| ||||| ||||| || |||||||| |||| ||||| | || ||||| Sbjct 33791 ATCTGATGATTCGACTTCAAGAGTTATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTG 33850 Query 192534 CATTTT 192539 ||| || Sbjct 33851 CATCTT 33856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984249018841200