Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq14499 143 5e-29
seq16577 122 2e-22
seq14413 96.9 6e-15
seq16938 89.7 9e-13
>seq14499
Length=662897
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902
||||| | ||| || | || | ||| | ||| | |||||| |||||||||||| |
Sbjct 223025 CCACCACGAAGACGAAGAACAAGATGAAGAGTCGACTCTTTCTGAATATTATAATCAGCA 223084
Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962
| || || | || || | ||||| || || || || |||||||| ||||| |||||
Sbjct 223085 AGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 223144
Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022
|| |||||||||||||| || || ||| |||||| |||||||| || ||| |||
Sbjct 223145 ATACCTTCTTTATCTTGGATCTTTGCTTTCACATTATCAATAGTATCCGAGCTTTCAACT 223204
Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|||| |||||||||||||| || ||||| |||| || ||||||||
Sbjct 223205 TCTAATGTAATGGTTTTACCGGTCAATGTCTTAACAAAAATCTGCAT 223251
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || | || | || | ||| | ||| || ||||| || ||
Sbjct 223250 ATACCACCACGGAGACGCAGGACCAGGTGAAGAGTTGACTCCTTTTGTATATTGTAGTCA 223309
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| ||| | || | || || | ||||| || || || || | ||| || ||||| |||
Sbjct 223310 GCTAAGGTACGGCCATCTTCAAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGT 223369
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| ||||| || ||| |||||||||| || || || || |||
Sbjct 223370 GGGATACCTTCTTTGTCTTGGATCTTAGCTTTTACATTATCGATGGTGTCGGAGCTTTCA 223429
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||||| || ||||||||||| |||| ||||| | ||| ||||||||
Sbjct 223430 ACTTCTAATGTGATGGTTTTACCGGTTAGGGTTTTGACGAAAATCTGCAT 223479
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| | | | || || |||| ||| | ||| || ||||| |||||
Sbjct 223934 ATACCACCTCTTAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCG 223993
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| ||| | || | || || | |||||| || || || || | |||||| || || ||
Sbjct 223994 GCTAAGGTACGGCCATCTTCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGA 224053
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| || ||||| || || ||| |||||| || || ||||| ||
Sbjct 224054 GGAATTCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCGATGGTGTCTGAGCTCTCA 224113
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| |||||||| ||||| | ||||| | ||| || |||||
Sbjct 224114 ACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 224163
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| | || | ||||||||| | || | || || || || || |||
Sbjct 223706 ATACCACCTCTTAAACGAAGTACTAAATGAAGGGTTGATTCCTTTTGGATGTTGTAGTCT 223765
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | | || |||| || | ||||||||||| || || | ||| ||||| || |||
Sbjct 223766 GCAAGGGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGATCTGGT 223825
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| ||||| || ||| || || || || || || || ||
Sbjct 223826 GGGATCCCTTCTTTGTCTTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCG 223885
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|||||||| || |||||||| || || | ||||| | ||| || |||||
Sbjct 223886 ACTTCTAGGGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCAT 223935
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| || | | | |||| ||| | || | ||| || |||||| |||||
Sbjct 224162 ATACCACCCCTCAACCTGAGAACTAGATGGAGGGTTGACTCCTTTTGAATATTGTAATCG 224221
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| ||| | || | || || | ||||| || || || || | |||||| ||||| ||
Sbjct 224222 GCTAAGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGGA 224281
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| || ||||| || || || |||||| || || || || ||
Sbjct 224282 GGAATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTCTCC 224341
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||||||||| || ||||| | ||||| | ||| || |||||
Sbjct 224342 ACCTCGAGAGTAATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 224391
>seq16577
Length=433012
Score = 122 bits (134), Expect = 2e-22
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972
|||| || | |||||| ||||| ||||| || | || || || ||||| ||||||||||
Sbjct 33697 CGTCTTCGAGTTGTTTTCCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCTT 33756
Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032
|||| || || || ||| ||||| || |||||||| ||||| ||||| ||||| |
Sbjct 33757 TATCCTGAATCTTGGCTTTGACATTGTCGATTGTATCTGATGATTCGACTTCAAGAGTTA 33816
Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| |||||||| |||| ||||| | ||| |||||||| ||
Sbjct 33817 TCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 33856
>seq14413
Length=739167
Score = 96.9 bits (106), Expect = 6e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
|||||||| || || || | |||||| ||||| || || || || ||||||||||| ||
Sbjct 402935 TGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGAATC 402994
Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043
||| ||| ||||| || || ||||| || |||||||| || ||||||||||||
Sbjct 402995 TTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTGATGGTTTTACCA 403054
Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069
|| | ||||| | || || |||||
Sbjct 403055 GTGAGAGTTTTCACAAAGATTTGCAT 403080
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||| || | || | || | ||| | ||| || || || || |||
Sbjct 403079 ATACCACCACGAAGACGAAGGACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCT 403138
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| ||||| || | || || | ||||||||| ||||| |||| ||| || ||||| ||
Sbjct 403139 GCTAAAGTACGGCCATCCTCAAGTTGTTTACCGGCAAAGATTAGTCTTTGCTGGTCCGGA 403198
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| || || || || || || || |||||| || || || || ||
Sbjct 403199 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTCTCC 403258
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| ||||| || |||||||||||||| | || || | || || |||||
Sbjct 403259 ACCTCTAGGGTGATGGTTTTACCAGTGAGAGTCTTGACAAAGATTTGCAT 403308
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
|||||||| ||||| || | |||||| ||||| || || ||||||||||| ||||| ||
Sbjct 402707 TGTTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGGATC 402766
Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043
||| ||| ||||| || || || || || || |||| ||| |||||||| ||
Sbjct 402767 TTAGCTTTGACATTGTCAATGGTGTCGGAACTCTCAACCTCTAAAGTGATGGTTTTGCCG 402826
Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069
|| | || || | || || |||||
Sbjct 402827 GTAAGGGTCTTTACAAAAATTTGCAT 402852
>seq16938
Length=276168
Score = 89.7 bits (98), Expect = 9e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894
|||| | ||||||||||| | || |||| ||| | ||||| |||||| || || |
Sbjct 249799 TCATGGTTCCACCTCTAAGCCTCAAGACTAGATGAAGAGTAGACTCTTTCTGGATGTTGT 249740
Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954
|||| | | | || | | || || | ||| ||||| ||||| || | ||||||||| |
Sbjct 249739 AATCCGCAAGTGTTCTTCCATCTTCTAGTTGCTTACCCGCAAAGATGAGTCTCTGTTGAT 249680
Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTA 171981
|||||||||| || ||||| || ||||
Sbjct 249679 CAGGTGGTATACCCTCTTTGTCCTGTA 249653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904928814369600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |