Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq14499 143 5e-29 seq16577 122 2e-22 seq14413 96.9 6e-15 seq16938 89.7 9e-13 >seq14499 Length=662897 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || | ||| | ||| | |||||| |||||||||||| | Sbjct 223025 CCACCACGAAGACGAAGAACAAGATGAAGAGTCGACTCTTTCTGAATATTATAATCAGCA 223084 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | || || | ||||| || || || || |||||||| ||||| ||||| Sbjct 223085 AGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 223144 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||||||||| || || ||| |||||| |||||||| || ||| ||| Sbjct 223145 ATACCTTCTTTATCTTGGATCTTTGCTTTCACATTATCAATAGTATCCGAGCTTTCAACT 223204 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| |||||||||||||| || ||||| |||| || |||||||| Sbjct 223205 TCTAATGTAATGGTTTTACCGGTCAATGTCTTAACAAAAATCTGCAT 223251 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | || | ||| | ||| || ||||| || || Sbjct 223250 ATACCACCACGGAGACGCAGGACCAGGTGAAGAGTTGACTCCTTTTGTATATTGTAGTCA 223309 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||| | || | || || | ||||| || || || || | ||| || ||||| ||| Sbjct 223310 GCTAAGGTACGGCCATCTTCAAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGT 223369 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || ||| |||||||||| || || || || ||| Sbjct 223370 GGGATACCTTCTTTGTCTTGGATCTTAGCTTTTACATTATCGATGGTGTCGGAGCTTTCA 223429 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| || ||||||||||| |||| ||||| | ||| |||||||| Sbjct 223430 ACTTCTAATGTGATGGTTTTACCGGTTAGGGTTTTGACGAAAATCTGCAT 223479 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | | | || || |||| ||| | ||| || ||||| ||||| Sbjct 223934 ATACCACCTCTTAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCG 223993 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||| | || | || || | |||||| || || || || | |||||| || || || Sbjct 223994 GCTAAGGTACGGCCATCTTCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGA 224053 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || ||| |||||| || || ||||| || Sbjct 224054 GGAATTCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCGATGGTGTCTGAGCTCTCA 224113 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| ||||| | ||||| | ||| || ||||| Sbjct 224114 ACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 224163 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | ||||||||| | || | || || || || || ||| Sbjct 223706 ATACCACCTCTTAAACGAAGTACTAAATGAAGGGTTGATTCCTTTTGGATGTTGTAGTCT 223765 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | ||||||||||| || || | ||| ||||| || ||| Sbjct 223766 GCAAGGGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGATCTGGT 223825 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || ||| || || || || || || || || Sbjct 223826 GGGATCCCTTCTTTGTCTTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCG 223885 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || |||||||| || || | ||||| | ||| || ||||| Sbjct 223886 ACTTCTAGGGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCAT 223935 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || | | | |||| ||| | || | ||| || |||||| ||||| Sbjct 224162 ATACCACCCCTCAACCTGAGAACTAGATGGAGGGTTGACTCCTTTTGAATATTGTAATCG 224221 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||| | || | || || | ||||| || || || || | |||||| ||||| || Sbjct 224222 GCTAAGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGGA 224281 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || || |||||| || || || || || Sbjct 224282 GGAATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTCTCC 224341 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||| || ||||| | ||||| | ||| || ||||| Sbjct 224342 ACCTCGAGAGTAATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 224391 >seq16577 Length=433012 Score = 122 bits (134), Expect = 2e-22 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | |||||| ||||| ||||| || | || || || ||||| |||||||||| Sbjct 33697 CGTCTTCGAGTTGTTTTCCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCTT 33756 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 |||| || || || ||| ||||| || |||||||| ||||| ||||| ||||| | Sbjct 33757 TATCCTGAATCTTGGCTTTGACATTGTCGATTGTATCTGATGATTCGACTTCAAGAGTTA 33816 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | |||||||| |||| ||||| | ||| |||||||| || Sbjct 33817 TCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 33856 >seq14413 Length=739167 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 |||||||| || || || | |||||| ||||| || || || || ||||||||||| || Sbjct 402935 TGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGAATC 402994 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| ||| ||||| || || ||||| || |||||||| || |||||||||||| Sbjct 402995 TTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTGATGGTTTTACCA 403054 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| | || || ||||| Sbjct 403055 GTGAGAGTTTTCACAAAGATTTGCAT 403080 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || | || | ||| | ||| || || || || ||| Sbjct 403079 ATACCACCACGAAGACGAAGGACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCT 403138 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||||| || | || || | ||||||||| ||||| |||| ||| || ||||| || Sbjct 403139 GCTAAAGTACGGCCATCCTCAAGTTGTTTACCGGCAAAGATTAGTCTTTGCTGGTCCGGA 403198 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || || || || || || |||||| || || || || || Sbjct 403199 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTCTCC 403258 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || |||||||||||||| | || || | || || ||||| Sbjct 403259 ACCTCTAGGGTGATGGTTTTACCAGTGAGAGTCTTGACAAAGATTTGCAT 403308 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 |||||||| ||||| || | |||||| ||||| || || ||||||||||| ||||| || Sbjct 402707 TGTTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGGATC 402766 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| ||| ||||| || || || || || || |||| ||| |||||||| || Sbjct 402767 TTAGCTTTGACATTGTCAATGGTGTCGGAACTCTCAACCTCTAAAGTGATGGTTTTGCCG 402826 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | || || ||||| Sbjct 402827 GTAAGGGTCTTTACAAAAATTTGCAT 402852 >seq16938 Length=276168 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| | ||||||||||| | || |||| ||| | ||||| |||||| || || | Sbjct 249799 TCATGGTTCCACCTCTAAGCCTCAAGACTAGATGAAGAGTAGACTCTTTCTGGATGTTGT 249740 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| | | | || | | || || | ||| ||||| ||||| || | ||||||||| | Sbjct 249739 AATCCGCAAGTGTTCTTCCATCTTCTAGTTGCTTACCCGCAAAGATGAGTCTCTGTTGAT 249680 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTA 171981 |||||||||| || ||||| || |||| Sbjct 249679 CAGGTGGTATACCCTCTTTGTCCTGTA 249653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904928814369600