Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq13562 141 3e-28
seq14079 113 1e-19
seq16580 102 2e-16
seq17937 95.1 4e-14
seq17304 95.1 4e-14
seq13254 91.5 4e-13
seq14680 87.8 5e-12
>seq13562
Length=1494055
Score = 141 bits (156), Expect = 3e-28
Identities = 287/421 (68%), Gaps = 10/421 (2%)
Strand=Plus/Minus
Query 288937 TTAAATCCATCCATACTT--GTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTG 288994
||||| ||||| || || ||||| | ||| || | |||||||| | ||||||||||
Sbjct 994127 TTAAACCCATC--TAATTCGGTTAACAATTGGTTTAAAGTTTGTTCACGTTCATCATTTC 994070
Query 288995 AACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGA 289054
||||| | || ||| || ||| | | |||||||| ||||||||| ||||| |
Sbjct 994069 CACCTCCTAAA----CCGGTTC-CTC-TAACTCTACCAACACTATCAATTTCATCAATAA 994016
Query 289055 AAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114
|| | ||| || ||||| | || | ||| || ||||| || | || ||||
Sbjct 994015 GTATTAAACAAGGTGAATTACTCTTTGCCTTGTTAAACAAGTCTCTAACCCTAGAAGCTC 993956
Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTG 289174
| | ||| ||| ||||||||||||| || ||| |||||| | | || | |||||| |
Sbjct 993955 CTATACCTACAAACATTTCTACAAAATCTGAACCGGATAATGACAAAAACGGTACATTAG 993896
Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234
|||| || |||| ||| | || | ||||| ||||| ||||| |||||||| ||| |
Sbjct 993895 CTTCTCCGGCTATTGCTTTGGCTAATAGTGTTTTACCGGTTCCTGGTGGTCCGGTTAACA 993836
Query 289235 GAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294
|| || || || | ||| || || ||| | |||| ||||| | | | |||||
Sbjct 993835 AAATACCTTTGGGGATTTTAGCTCCTAAAGATGTGAATTTTTCAGGTTTTTGGAGAAATT 993776
Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354
| || ||||| | || | |||||| || || |||||||| || | ||| || |
Sbjct 993775 CGACGATTTCGAAGAAATCTTGTTTTGCTTCGTCGATTCCTGCTATGTCTGAAAATGTTA 993716
Query 289355 T 289355
|
Sbjct 993715 T 993715
>seq14079
Length=689811
Score = 113 bits (124), Expect = 1e-19
Identities = 127/170 (75%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463
|||||||| ||||| | ||||||||| || || ||||||||| | ||| | |
Sbjct 45778 GCGATAAGCCCACAGCATTCACACACATGTACTCTATAAGCATCACTTTGATCAAACAAT 45719
Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523
| | || ||| ||| ||||| |||| ||||||||||||||| ||||||||||||
Sbjct 45718 CTCTCTTTCAAGAAATGAGCAGCACCATGTGCAATCATACAATCACGTTCCATTTCACCG 45659
Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573
||||| ||||||||||| |||| | ||||| || || || || |||||
Sbjct 45658 AAACGTAGACCACCATCACGAGATCGTCCCTCAGCTGGTTGCCGTGTGAG 45609
Score = 96.9 bits (106), Expect = 1e-14
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331
|||||| || ||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct 45698 AGCACCATGTGCAATCATACAATCACGTTCCATTTCACCGAAACGTAGACCACCATCACG 45639
Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATT 233391
|| | |||| ||| ||| || || | | ||||| | |||| |||
Sbjct 45638 AGATCGTCCCTCAGCTGGTTGCCGTGTGAGGATTTGCACAGGACCTCGTCCACGTGAATG 45579
Query 233392 AATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATA 233447
||||| || | |||||||||||||| ||| |||||| ||| |||| ||||
Sbjct 45578 TATTTTGTCATCAACCATATGCTTCAATCTTTGGTAATAAGTCGGTCCAAGGAATA 45523
>seq16580
Length=224205
Score = 102 bits (112), Expect = 2e-16
Identities = 319/484 (66%), Gaps = 14/484 (3%)
Strand=Plus/Plus
Query 288873 TAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT 288932
||| |||| ||||| ||||| |||||||||||||| || | ||||| ||| | | |
Sbjct 139738 TAAAGCTGAGTCTAGAATATCTGCTCTGTTTGTTGCAGCAACTACAATAATGCCTGTGTT 139797
Query 288933 TTGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATT 288992
|| ||| |||||||| || | | ||||| || || ||||| |||||||||||
Sbjct 139798 ACCCTCAAACCCATCCATCTCAGTCAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATT 139857
Query 288993 TGAACCT-CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAA 289051
|||| | ||| ||| || || |||| | |||||||||| || ||||| || |
Sbjct 139858 ---ACCTCCACCAAT--TCCGGTTC-CT-CTTTGTCTACCAACAGCGTCTATTTCATCTA 139910
Query 289052 TGAAAATCACACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGA 289109
|| | | || |||| ||||| | || ||| ||| | || | || | ||
Sbjct 139911 CAAAGACAATGCATGGAGCATTTTCCTTGGCTTTCTTGAAAAGA--TCACGGACCCTTGA 139968
Query 289110 TGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTA 289168
|| |||| ||||||| |||| || || || || ||| | || | | || | ||| | ||
Sbjct 139969 GGCACCAACACCAACAAACATCTCAACGAACTCGGAACCAGAGA-TAGAGAAGAAAGGTA 140027
Query 289169 CATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCT 289228
|| ||||| || || | || | |||| ||| || || || || ||||| || ||
Sbjct 140028 CACCAGCTTCACCAGCAATAGCTTTTGCCAAAAGGGTTTTTCCAGTACCAGGAGGACCAA 140087
Query 289229 CTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTA 289288
| ||||| || ||||| | || ||| | | | || | || || |||| |
Sbjct 140088 TAAGGAGAACACCTTTTGGGATCCGGGCACCAACTGCAGTGAATCTTTCGGGCTTCTTCA 140147
Query 289289 AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAA 289348
||| ||||| | |||| | || | || || |||||| ||| || |||||| |||
Sbjct 140148 GAAACTCTACCACTTCCATGAAATCCTGCTTGGCTTCATCAACTCCAGCAACATCATCAA 140207
Query 289349 AAGT 289352
| ||
Sbjct 140208 ATGT 140211
>seq17937
Length=105460
Score = 95.1 bits (104), Expect = 4e-14
Identities = 212/316 (67%), Gaps = 2/316 (1%)
Strand=Plus/Minus
Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088
||||| |||||||| || ||||| || || | | ||||| | ||||| || |
Sbjct 27880 ACCAATTGCATCAATCTCATCAATAAATATAATGCTCGGAGCAGACTGTCTAGCTTCTTG 27821
Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148
|| || | ||| || | || | ||||| |||||| |||| || | || || ||| |
Sbjct 27820 GAACAAGTGTCTCACCCTCGAAGGTCCAACTCCAACAAACATCTCCATGAAATCTGAACC 27761
Query 289149 GGATACTTGAATGAA-TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
|||| | || ||| || ||| || ||| |||||| || | || ||||||||||
Sbjct 27760 AGATA-TAGACAGAAATGGCACACCTGATTCTCCTGCTGTAGCTTTTGCTAGAAGTGTCT 27702
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267
| || || || ||||| || |||| || | || || || | ||| || || | ||
Sbjct 27701 TTCCCGTCCCTGGTGGACCAACTAAAAGTGCCCCTTTCGGAATTTTAGCACCCAAATCCT 27642
Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327
|||||||| || | | | || | ||||| |||| || ||| | ||| ||||| |
Sbjct 27641 CATATTTCTTTGGATTTTGGAGGAAATGTACAAATTCCATAATTTCTTGTTTAGCCTCCT 27582
Query 289328 CACATCCTGCTACATC 289343
|||| || || |||||
Sbjct 27581 CACAGCCAGCAACATC 27566
>seq17304
Length=552903
Score = 95.1 bits (104), Expect = 4e-14
Identities = 325/498 (65%), Gaps = 18/498 (4%)
Strand=Plus/Plus
Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911
||||||||| |||| | | | ||| | || | | ||| | |||||| ||||| ||
Sbjct 425593 ATCAAACCTTCCAGGTCTAAGAAGTGCAGAATCAAGAACATCAGGTCTGTTAGTTGCAGC 425652
Query 288912 CAATACAACAATAGATTCGGTTTGCTT--AAATCCATCCATACTTGTTAAAATTTGATTA 288969
|||||| | || | | | || | ||| |||||||| |||||| | ||||||
Sbjct 425653 CAATACTATAACACCT--GAATTCCCAGAAAAACCATCCATTTCTGTTAACAACTGATTA 425710
Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029
| ||||| || || || |||||| ||||| || | | |||||| | | |
Sbjct 425711 ATCGTTTGCTCTCTCTCGTCATTTCCACCTCC-----CATTCCA---GCTCCTCTCTGTC 425762
Query 289030 --CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTC-TCGCAATT 289086
|||||||||||||| || || ||||| | | ||||| | ||||| | | || |
Sbjct 425763 TTCCAACAGCATCAATCTCATCTATGAACACAATGCACGGTG-CTTTTGACTTGGCTTTC 425821
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
|||| || || || || | || || || | |||||| | | || || || || ||
Sbjct 425822 TCAAACAAATCCCTAACTCTAGACGCACCTACACCAACGAAAAGCTCCACGAACTCGGAC 425881
Query 289147 GCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205
|| | || || | ||| | ||| |||||| || ||||| || || || | ||| ||
Sbjct 425882 GCTG-CACAAGAGAAGAACGGTACTCCTGCTTCTCCAGCTACAGCTCTAGCTAAAAGAGT 425940
Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265
|||||| || || |||||||| | | || | ||| ||||| | || || || |
Sbjct 425941 CTTACCAGTACCTGGTGGTCCTACCAGTAAACATCCTTTTGGAATCTTAGCACCTAGTGC 426000
Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325
| || || || || |||| || || || || | ||| | | |||| ||||| |
Sbjct 426001 TGTGTACTTATCTGGATTCTTCAAGAAATCCACTACTTCTTGTAATTCAAGCTTTGCTTG 426060
Query 289326 ATCACATCCTGCTACATC 289343
|||| ||| || |||||
Sbjct 426061 ATCAGCTCCAGCAACATC 426078
>seq13254
Length=308538
Score = 91.5 bits (100), Expect = 4e-13
Identities = 223/338 (66%), Gaps = 0/338 (0%)
Strand=Plus/Minus
Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598
||||| || || |||||| | ||| || || ||||| ||||| || || | |
Sbjct 232908 TTTCTGACTGTTCCATCATATTTTACCATGATATCCTCCATGGCCTTGACCAATCGCCTC 232849
Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658
||||| || |||||| ||||| || ||||| |||||||| ||||| | | ||||||
Sbjct 232848 TGAATGTATCCAGTTTCTGATGTCTTCACAGCAGTATCAATAAGACCTTCTCTTCCACCC 232789
Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718
||||||||||| || | |||| || | ||| | | | || |||| || ||
Sbjct 232788 ATAGCATGGAAAAAGAATTCTTGAGGAGTCAACCCACGCAGGTACGAATTCTCTACAAAT 232729
Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778
||||| || || || || ||||| || ||||| | |||| ||| |
Sbjct 232728 CCACGACTTTCAGGACCATAATCATCTTTGGTGAAATGTGGTAACGTCCGCCCATCAAAT 232669
Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838
|| ||||||| ||||| || || || || ||||| || | || | |||| || ||
Sbjct 232668 CCAAATGGGATCCGCTTCCCTTCTACATTTTGCTGACCGACACATGCTGTCATTTGAGAG 232609
Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876
||||| | ||| || ||||| || || | |||||
Sbjct 232608 ATATTAATGAAACTTCCTTTGGATCCTGCTGTGACCAT 232571
>seq14680
Length=376954
Score = 87.8 bits (96), Expect = 5e-12
Identities = 168/247 (68%), Gaps = 3/247 (1%)
Strand=Plus/Plus
Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105
|||| || |||||||| || || || ||||| |||||||| | ||| || || | |
Sbjct 229210 TACCCTTTCTCTTGCCTCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCA 229269
Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165
|||| |||| ||||||||| || || ||||| || || ||||| | |||| || |
Sbjct 229270 GCATTGGAACAATACCATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCAC 229329
Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225
| | |||||||| | ||||||||||| | |||| || ||| || || |
Sbjct 229330 GTATATTATGAACCGAAACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTT 229389
Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAAC 156285
| | |||| | ||||| ||||| |||||| | ||| ||| |||| | || ||
Sbjct 229390 TAAGTGTATCATATATACCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTAC 229449
Query 156286 TTAATTG 156292
|||| ||
Sbjct 229450 TTAACTG 229456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471472278475144
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