Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq13562 141 3e-28 seq14079 113 1e-19 seq16580 102 2e-16 seq17937 95.1 4e-14 seq17304 95.1 4e-14 seq13254 91.5 4e-13 seq14680 87.8 5e-12 >seq13562 Length=1494055 Score = 141 bits (156), Expect = 3e-28 Identities = 287/421 (68%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 288937 TTAAATCCATCCATACTT--GTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTG 288994 ||||| ||||| || || ||||| | ||| || | |||||||| | |||||||||| Sbjct 994127 TTAAACCCATC--TAATTCGGTTAACAATTGGTTTAAAGTTTGTTCACGTTCATCATTTC 994070 Query 288995 AACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGA 289054 ||||| | || ||| || ||| | | |||||||| ||||||||| ||||| | Sbjct 994069 CACCTCCTAAA----CCGGTTC-CTC-TAACTCTACCAACACTATCAATTTCATCAATAA 994016 Query 289055 AAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114 || | ||| || ||||| | || | ||| || ||||| || | || |||| Sbjct 994015 GTATTAAACAAGGTGAATTACTCTTTGCCTTGTTAAACAAGTCTCTAACCCTAGAAGCTC 993956 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTG 289174 | | ||| ||| ||||||||||||| || ||| |||||| | | || | |||||| | Sbjct 993955 CTATACCTACAAACATTTCTACAAAATCTGAACCGGATAATGACAAAAACGGTACATTAG 993896 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 |||| || |||| ||| | || | ||||| ||||| ||||| |||||||| ||| | Sbjct 993895 CTTCTCCGGCTATTGCTTTGGCTAATAGTGTTTTACCGGTTCCTGGTGGTCCGGTTAACA 993836 Query 289235 GAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294 || || || || | ||| || || ||| | |||| ||||| | | | ||||| Sbjct 993835 AAATACCTTTGGGGATTTTAGCTCCTAAAGATGTGAATTTTTCAGGTTTTTGGAGAAATT 993776 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 | || ||||| | || | |||||| || || |||||||| || | ||| || | Sbjct 993775 CGACGATTTCGAAGAAATCTTGTTTTGCTTCGTCGATTCCTGCTATGTCTGAAAATGTTA 993716 Query 289355 T 289355 | Sbjct 993715 T 993715 >seq14079 Length=689811 Score = 113 bits (124), Expect = 1e-19 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 |||||||| ||||| | ||||||||| || || ||||||||| | ||| | | Sbjct 45778 GCGATAAGCCCACAGCATTCACACACATGTACTCTATAAGCATCACTTTGATCAAACAAT 45719 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | | || ||| ||| ||||| |||| ||||||||||||||| |||||||||||| Sbjct 45718 CTCTCTTTCAAGAAATGAGCAGCACCATGTGCAATCATACAATCACGTTCCATTTCACCG 45659 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 ||||| ||||||||||| |||| | ||||| || || || || ||||| Sbjct 45658 AAACGTAGACCACCATCACGAGATCGTCCCTCAGCTGGTTGCCGTGTGAG 45609 Score = 96.9 bits (106), Expect = 1e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 |||||| || ||||||||||||||||||||||||||||| | ||| |||||||||||| Sbjct 45698 AGCACCATGTGCAATCATACAATCACGTTCCATTTCACCGAAACGTAGACCACCATCACG 45639 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATT 233391 || | |||| ||| ||| || || | | ||||| | |||| ||| Sbjct 45638 AGATCGTCCCTCAGCTGGTTGCCGTGTGAGGATTTGCACAGGACCTCGTCCACGTGAATG 45579 Query 233392 AATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATA 233447 ||||| || | |||||||||||||| ||| |||||| ||| |||| |||| Sbjct 45578 TATTTTGTCATCAACCATATGCTTCAATCTTTGGTAATAAGTCGGTCCAAGGAATA 45523 >seq16580 Length=224205 Score = 102 bits (112), Expect = 2e-16 Identities = 319/484 (66%), Gaps = 14/484 (3%) Strand=Plus/Plus Query 288873 TAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT 288932 ||| |||| ||||| ||||| |||||||||||||| || | ||||| ||| | | | Sbjct 139738 TAAAGCTGAGTCTAGAATATCTGCTCTGTTTGTTGCAGCAACTACAATAATGCCTGTGTT 139797 Query 288933 TTGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATT 288992 || ||| |||||||| || | | ||||| || || ||||| ||||||||||| Sbjct 139798 ACCCTCAAACCCATCCATCTCAGTCAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATT 139857 Query 288993 TGAACCT-CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAA 289051 |||| | ||| ||| || || |||| | |||||||||| || ||||| || | Sbjct 139858 ---ACCTCCACCAAT--TCCGGTTC-CT-CTTTGTCTACCAACAGCGTCTATTTCATCTA 139910 Query 289052 TGAAAATCACACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGA 289109 || | | || |||| ||||| | || ||| ||| | || | || | || Sbjct 139911 CAAAGACAATGCATGGAGCATTTTCCTTGGCTTTCTTGAAAAGA--TCACGGACCCTTGA 139968 Query 289110 TGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTA 289168 || |||| ||||||| |||| || || || || ||| | || | | || | ||| | || Sbjct 139969 GGCACCAACACCAACAAACATCTCAACGAACTCGGAACCAGAGA-TAGAGAAGAAAGGTA 140027 Query 289169 CATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCT 289228 || ||||| || || | || | |||| ||| || || || || ||||| || || Sbjct 140028 CACCAGCTTCACCAGCAATAGCTTTTGCCAAAAGGGTTTTTCCAGTACCAGGAGGACCAA 140087 Query 289229 CTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTA 289288 | ||||| || ||||| | || ||| | | | || | || || |||| | Sbjct 140088 TAAGGAGAACACCTTTTGGGATCCGGGCACCAACTGCAGTGAATCTTTCGGGCTTCTTCA 140147 Query 289289 AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAA 289348 ||| ||||| | |||| | || | || || |||||| ||| || |||||| ||| Sbjct 140148 GAAACTCTACCACTTCCATGAAATCCTGCTTGGCTTCATCAACTCCAGCAACATCATCAA 140207 Query 289349 AAGT 289352 | || Sbjct 140208 ATGT 140211 >seq17937 Length=105460 Score = 95.1 bits (104), Expect = 4e-14 Identities = 212/316 (67%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| |||||||| || ||||| || || | | ||||| | ||||| || | Sbjct 27880 ACCAATTGCATCAATCTCATCAATAAATATAATGCTCGGAGCAGACTGTCTAGCTTCTTG 27821 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || || | ||| || | || | ||||| |||||| |||| || | || || ||| | Sbjct 27820 GAACAAGTGTCTCACCCTCGAAGGTCCAACTCCAACAAACATCTCCATGAAATCTGAACC 27761 Query 289149 GGATACTTGAATGAA-TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| | || ||| || ||| || ||| |||||| || | || |||||||||| Sbjct 27760 AGATA-TAGACAGAAATGGCACACCTGATTCTCCTGCTGTAGCTTTTGCTAGAAGTGTCT 27702 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || || || ||||| || |||| || | || || || | ||| || || | || Sbjct 27701 TTCCCGTCCCTGGTGGACCAACTAAAAGTGCCCCTTTCGGAATTTTAGCACCCAAATCCT 27642 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 |||||||| || | | | || | ||||| |||| || ||| | ||| ||||| | Sbjct 27641 CATATTTCTTTGGATTTTGGAGGAAATGTACAAATTCCATAATTTCTTGTTTAGCCTCCT 27582 Query 289328 CACATCCTGCTACATC 289343 |||| || || ||||| Sbjct 27581 CACAGCCAGCAACATC 27566 >seq17304 Length=552903 Score = 95.1 bits (104), Expect = 4e-14 Identities = 325/498 (65%), Gaps = 18/498 (4%) Strand=Plus/Plus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 ||||||||| |||| | | | ||| | || | | ||| | |||||| ||||| || Sbjct 425593 ATCAAACCTTCCAGGTCTAAGAAGTGCAGAATCAAGAACATCAGGTCTGTTAGTTGCAGC 425652 Query 288912 CAATACAACAATAGATTCGGTTTGCTT--AAATCCATCCATACTTGTTAAAATTTGATTA 288969 |||||| | || | | | || | ||| |||||||| |||||| | |||||| Sbjct 425653 CAATACTATAACACCT--GAATTCCCAGAAAAACCATCCATTTCTGTTAACAACTGATTA 425710 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 | ||||| || || || |||||| ||||| || | | |||||| | | | Sbjct 425711 ATCGTTTGCTCTCTCTCGTCATTTCCACCTCC-----CATTCCA---GCTCCTCTCTGTC 425762 Query 289030 --CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTC-TCGCAATT 289086 |||||||||||||| || || ||||| | | ||||| | ||||| | | || | Sbjct 425763 TTCCAACAGCATCAATCTCATCTATGAACACAATGCACGGTG-CTTTTGACTTGGCTTTC 425821 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 |||| || || || || | || || || | |||||| | | || || || || || Sbjct 425822 TCAAACAAATCCCTAACTCTAGACGCACCTACACCAACGAAAAGCTCCACGAACTCGGAC 425881 Query 289147 GCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 || | || || | ||| | ||| |||||| || ||||| || || || | ||| || Sbjct 425882 GCTG-CACAAGAGAAGAACGGTACTCCTGCTTCTCCAGCTACAGCTCTAGCTAAAAGAGT 425940 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 |||||| || || |||||||| | | || | ||| ||||| | || || || | Sbjct 425941 CTTACCAGTACCTGGTGGTCCTACCAGTAAACATCCTTTTGGAATCTTAGCACCTAGTGC 426000 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | || || || || |||| || || || || | ||| | | |||| ||||| | Sbjct 426001 TGTGTACTTATCTGGATTCTTCAAGAAATCCACTACTTCTTGTAATTCAAGCTTTGCTTG 426060 Query 289326 ATCACATCCTGCTACATC 289343 |||| ||| || ||||| Sbjct 426061 ATCAGCTCCAGCAACATC 426078 >seq13254 Length=308538 Score = 91.5 bits (100), Expect = 4e-13 Identities = 223/338 (66%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| || || |||||| | ||| || || ||||| ||||| || || | | Sbjct 232908 TTTCTGACTGTTCCATCATATTTTACCATGATATCCTCCATGGCCTTGACCAATCGCCTC 232849 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||| || |||||| ||||| || ||||| |||||||| ||||| | | |||||| Sbjct 232848 TGAATGTATCCAGTTTCTGATGTCTTCACAGCAGTATCAATAAGACCTTCTCTTCCACCC 232789 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 ||||||||||| || | |||| || | ||| | | | || |||| || || Sbjct 232788 ATAGCATGGAAAAAGAATTCTTGAGGAGTCAACCCACGCAGGTACGAATTCTCTACAAAT 232729 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 ||||| || || || || ||||| || ||||| | |||| ||| | Sbjct 232728 CCACGACTTTCAGGACCATAATCATCTTTGGTGAAATGTGGTAACGTCCGCCCATCAAAT 232669 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 || ||||||| ||||| || || || || ||||| || | || | |||| || || Sbjct 232668 CCAAATGGGATCCGCTTCCCTTCTACATTTTGCTGACCGACACATGCTGTCATTTGAGAG 232609 Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||| | ||| || ||||| || || | ||||| Sbjct 232608 ATATTAATGAAACTTCCTTTGGATCCTGCTGTGACCAT 232571 >seq14680 Length=376954 Score = 87.8 bits (96), Expect = 5e-12 Identities = 168/247 (68%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || |||||||| || || || ||||| |||||||| | ||| || || | | Sbjct 229210 TACCCTTTCTCTTGCCTCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCA 229269 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| ||||||||| || || ||||| || || ||||| | |||| || | Sbjct 229270 GCATTGGAACAATACCATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCAC 229329 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 | | |||||||| | ||||||||||| | |||| || ||| || || | Sbjct 229330 GTATATTATGAACCGAAACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTT 229389 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAAC 156285 | | |||| | ||||| ||||| |||||| | ||| ||| |||| | || || Sbjct 229390 TAAGTGTATCATATATACCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTAC 229449 Query 156286 TTAATTG 156292 |||| || Sbjct 229450 TTAACTG 229456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471472278475144