Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq11797 668 0.0 seq17927 627 9e-175 seq15851 100 3e-16 seq14836 89.7 6e-13 seq12403 84.2 2e-11 >seq11797 Length=28381 Score = 668 bits (740), Expect = 0.0 Identities = 749/997 (75%), Gaps = 6/997 (1%) Strand=Plus/Minus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||| ||| ||||| | ||| ||| | |||||||| || | || ||||| ||||| | Sbjct 1401 CTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1342 Query 150898 GATGATTCCAACTCTGTTGGCAGCAAC--CATTTGCTTCATCGTGGCATTCATCGCTGCT 150955 |||||| || || | ||| | ||||| | || || || | ||||| || |||||| Sbjct 1341 GATGATCCCTACCTTATTGACCGCAACTTCCGTT--TTTATTATCGCATTTATTGCTGCT 1284 Query 150956 CCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAAC 151015 || || || || || ||||| || |||||||| ||| |||| ||||| | ||||| ||| Sbjct 1283 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 1224 Query 151016 AACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCC 151075 || || || || ||||| || ||||| ||||| ||||||||| |||| || || || Sbjct 1223 AATATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCA 1164 Query 151076 ATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTT 151135 || |||||||| || || | ||||||||||| |||||||||||||||| |||| || Sbjct 1163 ATTTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 1104 Query 151136 GTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTAC 151195 || | ||||| | ||||| | | ||| |||||||||||||||||||| || | Sbjct 1103 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1044 Query 151196 CGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAG 151254 || |||||||||||||| ||||| ||| |||||||| || ||||| ||||| ||||| | Sbjct 1043 CGTTTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 985 Query 151255 TGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGG 151314 |||||| ||| | |||||||| | |||||||| || ||||||| ||||| || || Sbjct 984 TGCAGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 925 Query 151315 TATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCA 151374 || ||||| || ||||||| |||| |||| ||||| || ||||| |||||||| ||||| Sbjct 924 AATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCA 865 Query 151375 CCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCA 151434 ||| || || ||| | ||||| |||||||| ||||| || || || || || ||||| Sbjct 864 CCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCA 805 Query 151435 CGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTA 151494 |||||| |||| |||||| || | | || ||||| ||||| || || || | Sbjct 804 TGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 745 Query 151495 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTT 151554 ||||||| ||||||||||||||||| || |||||||| || || || || ||||| || Sbjct 744 AGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTT 685 Query 151555 TGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCT 151614 ||| || | ||||||||||| ||| ||||||||||| ||||| | || |||||| | Sbjct 684 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTT 625 Query 151615 CGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATT 151674 || || ||||| || || ||||| ||||| ||||| | ||| | || || |||||||| Sbjct 624 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATT 565 Query 151675 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAA 151734 ||| | || || ||||| |||||||| || | | ||| |||| || || | || Sbjct 564 TAACTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAA 505 Query 151735 CACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAA 151794 || ||||| || || | |||||||| || ||||||||||||||||| || ||||| Sbjct 504 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 445 Query 151795 TGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 151831 |||||||||||||||||| ||||| |||| || |||| Sbjct 444 TGCTCACAACTTCCCTCTAGACCTAGCTGTTGTTGAG 408 >seq17927 Length=56337 Score = 627 bits (694), Expect = 9e-175 Identities = 749/1014 (74%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418 |||||| | ||||||||||| | ||| ||||| ||||||||||| ||||||||||| Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063 Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478 || | || ||||| ||| ||| ||||| | || |||||| | || || || || || Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123 Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT 152538 | || ||||||||||| || ||||| ||||||||| | || || || ||| | Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 4183 Query 152539 ACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 152598 || || || ||||||||||| || || | | | ||||| | || | || |||||| Sbjct 4184 ACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGT 4243 Query 152599 CCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTG 152658 ||||| || ||||| ||||| | ||| ||| | || || || ||| ||||||| Sbjct 4244 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 4303 Query 152659 GCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG- 152717 || |||||||| |||||||| |||| ||||| ||| | || || |||||||| || || Sbjct 4304 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 4363 Query 152718 TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 152777 ||| || | | || || || ||||| || || ||||||||||| || ||||||||||| Sbjct 4364 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 4422 Query 152778 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGG 152837 | ||||| || || || || || |||||||| ||||||| || || || ||| || Sbjct 4423 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 4482 Query 152838 GGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAA 152897 || || || || || ||||| | ||||| | ||||| || || || ||||||||||| Sbjct 4483 TGTAGCGGCTATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 4542 Query 152898 TCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCA 152957 || |||||||||||||| || || ||| | |||| | ||| |||| | || ||||| Sbjct 4543 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 4602 Query 152958 TGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGC 153017 ||||| ||| ||||| |||||||| | | |||||||||| ||||| || ||| || Sbjct 4603 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 4662 Query 153018 TTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 153077 ||| || ||||||| ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 4663 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 4722 Query 153078 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 153137 || || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||||| Sbjct 4723 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 4782 Query 153138 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 153197 ||| || | ||| | |||| | || ||||| | | ||||| ||| | || || || Sbjct 4783 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 4842 Query 153198 TGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 153257 || || || ||||| || || |||||| | || | |||||||| ||||||||||| || Sbjct 4843 CGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 4902 Query 153258 CTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCA 153317 ||| || || ||||| ||||| ||||||||| ||||||||||| |||| || || || Sbjct 4903 CTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 4962 Query 153318 ACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 |||||||| ||| | | |||||||| ||||| | ||||| || |||||||| Sbjct 4963 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016 >seq15851 Length=433742 Score = 100 bits (110), Expect = 3e-16 Identities = 136/186 (73%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 151995 GATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGT 152054 || ||||| |||||| | || || ||||| ||| |||| |||| ||| |||| || Sbjct 393560 GACGACCAATACATCCTTGAAGCAGCTGAAGAAGCAGGACTTGACATGCCTCACTCATGC 393619 Query 152055 CGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGT 152114 ||||||||||||||| | || ||||| ||||||||| ||||| ||||| ||| | Sbjct 393620 AAGGCTGGTGCATGTTCCACATGCGCTGGACAGATTGTGAAGGGTACTGTTGACCAGTCT 393679 Query 152115 GACCAATCAT-TCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGC 152173 || || | |||| || || |||||||| || ||| | ||| ||||| ||||| || Sbjct 393680 GAGGGTTCGTATCTT-GAAGAAGACCAGATGGAGAGAGGTTACGTACTGACTTGTGTAGC 393738 Query 152174 ATATCC 152179 ||||| Sbjct 393739 -TATCC 393743 >seq14836 Length=433140 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/185 (72%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 152008 TCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGTGCAT 152067 ||||| | |||||||| ||| ||| |||| || | |||||| ||| ||||| | | Sbjct 174423 TCTTG-ACGCTGCTGAAGAAGCTGGAATTGACTTGCCTTTCTCTTGCCGTTCTGGTTCTT 174481 Query 152068 GTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCA-TTC 152126 |||| ||||||||||| ||||| ||||| |||| |||| || ||||| ||| Sbjct 174482 GTTCAAGCTGTGCTGGTAAAGTTGTGTCTGGTAATATTGACCAGACAGA-TAATCAGTTC 174540 Query 152127 TTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAACTTCT 152186 | |||||||| ||||| | | || | || || || ||||| || || || |||||| Sbjct 174541 CTTGATGATGATCAGATGGCTGCTGGCTATGTCCTCACTTGTGTAGCTTACCCTACTTCT 174600 Query 152187 GATGT 152191 ||||| Sbjct 174601 GATGT 174605 >seq12403 Length=479826 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/185 (71%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 152008 TCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGTGCAT 152067 ||||| |||| ||||| ||| || ||||| || ||||| || ||||||||| | | Sbjct 152726 TCTTG-ATGCAGCTGAAGAAGCTGGTCTTGATTTGCCTTACTCGTGCCGTGCTGGTTCTT 152668 Query 152068 GTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCATTCT 152127 |||| |||||| || || | ||| ||| | |||||||| || || || | Sbjct 152667 GTTCAAGTTGTGCAGGGAAAGTAGTGGCTGGATCTGTTGATCAATCAGATCAGAGTTTTT 152608 Query 152128 TGGATGATGACCAGATTGAATCA-GGATTCGTGCTGACCTGTGTTGCATATCCAACTTCT 152186 | || ||||| ||||| || | | |||| || || || ||||| || |||||||||||| Sbjct 152607 TAGAAGATGAACAGAT-GAGTGAAGGATATGTTCTTACTTGTGTAGCGTATCCAACTTCT 152549 Query 152187 GATGT 152191 ||||| Sbjct 152548 GATGT 152544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549496591432640