Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq14462 129 7e-24 >seq14462 Length=746139 Score = 129 bits (142), Expect = 7e-24 Identities = 187/263 (71%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||| | |||||| |||| ||| || |||||||| || || || Sbjct 137917 CCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAGTCCAGGCATGAGACCTCGTTTT 137858 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || |||| ||||||||| || ||||| ||||| || || ||| ||| ||| Sbjct 137857 TTAAGCCAGAAAATGGAGCAGAAACTACCGGAGAAGAAGATACCTTCAACGCAGGCGAAG 137798 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | || ||||| |||||||| | ||| || || |||||| |||||||||| Sbjct 137797 GCTACGATACGCTCCGCAAAGGTTT-GAGATCC-----GTCGATCCAAGTCATCGCCCAT 137744 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | || || || || |||| | || ||||| ||||||||||| ||||| |||| Sbjct 137743 TGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGCGCGAAAGAGATGGTCTCTTTCT 137684 Query 869420 GCCGGGTCCTTGACATAGGTGTC 869442 |||||||| ||||| || Sbjct 137683 TTGTTGTCCTTGATGTAGGTATC 137661 Score = 123 bits (136), Expect = 3e-22 Identities = 209/301 (69%), Gaps = 9/301 (3%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| || || ||||| || ||||| || || ||||| || || | | |||| | || | Sbjct 137640 CCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCCGATACCT 137581 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || |||||| || || || ||||| |||||||| || |||||||| Sbjct 137580 GAACATCGGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAGGCGGCGA 137521 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || | ||| |||||||| ||||| || ||| ||||| | | | |||| | | Sbjct 137520 AGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTTTAAATTCTCCCAATCGC 137461 Query 869811 CGGTGTCGGCGCTG----AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTT 869866 ||| | ||| || || || |||||||| ||||| | ||| ||||||||||| Sbjct 137460 ----GTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGCCTTC 137405 Query 869867 TTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTT 869925 |||||||||||||| | || |||| | || ||||| | ||| | || ||||||| Sbjct 137404 TTGTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCTGTCTGGGGTT 137345 Query 869926 G 869926 | Sbjct 137344 G 137344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105636431524904