Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq14499 105 6e-18 seq14413 89.7 4e-13 seq16938 87.8 1e-12 seq12446 84.2 2e-11 >seq14499 Length=662897 Score = 105 bits (116), Expect = 6e-18 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC-CT 110329 |||||||| || ||||||||| | |||||||||||||| ||| | ||| || |||| || Sbjct 223935 ATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTCT 223876 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || || |||||| ||||||||||| | || ||| Sbjct 223875 GAC---ACCATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAAGGGATCCCACCAGAT 223819 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||||| || | || ||||||||||| ||||| | | || | || || ||| Sbjct 223818 CAACAAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTAC 223759 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| ||||| ||||| || Sbjct 223758 AACATCCAAAAGGAATCAAC 223739 >seq14413 Length=739167 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| ||||| |||||| | || || |||||||| ||| | ||| ||| || | Sbjct 403080 ATGCAAATCTTTGTGAAAACTCTCACTGGTAAAACCATCACCCTAGAAGTTGAGAGCTCA 403021 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || ||| |||||| || ||||| || | || ||| || Sbjct 403020 -GACACCATTGACAATGTCAAAGCTAAGATTCAAGATAAAGAGGGTATCCCTCCGGACCA 402962 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || |||||||| | || ||||||||||| ||||||| | || | || || ||||| Sbjct 402961 GCAGAGACTTATCTTCGCCGGTAAACAGCTCGAGGATGGTCGTACTCTAGCTGACTACAA 402902 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||| || || ||||| || | ||| ||||| Sbjct 402901 CATCCAGAAGGAATCCACCCTCCACTTGGTG 402871 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || | |||||||||||||| || | || ||| | | Sbjct 402852 ATGCAAATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTTTAGAGGTTGAGAGTTCC 402793 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || ||| ||||| ||||||||||| | || || || Sbjct 402792 GACACCATTGACAATGTCAAAGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 402733 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | ||| ||||||||||| || |||| | | || | || || |||||| Sbjct 402732 CAGAGACTTATCTTTGCCGGTAAACAGCTAGAAGATGGCCGTACCCTTGCTGACTACAAC 402673 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| || || || Sbjct 402672 ATCCAAAAGGAGTCCAC 402656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || ||||| || || | |||||||||||||| || | ||| ||| || | Sbjct 402624 ATGCAGATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTCTAGAAGTTGAGAGCTCA 402565 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | |||||| |||||| ||||| || || | || ||| || Sbjct 402564 -GACACCATTGACAATGTAAAAGCTAAGATTCAAGACAAGGAGGGTATTCCTCCGGACCA 402506 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | || | ||| || |||||||| || |||| | | || | || |||||||| Sbjct 402505 GCAACGTTTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTGCAGATTACAA 402446 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || ||||| || | ||| ||||| || | || || || || Sbjct 402445 CATTCAGAAGGAATCAACTCTTCACCTGGTGCTACGTCTCCGTGGTGG 402398 >seq16938 Length=276168 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 |||||||| || | || |||||||| ||||| || | ||||||||| || || || Sbjct 249658 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCGGGTAAGCAACTAGAA 249717 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||||| | |||||||||||||| || ||||| ||||| | || | || || Sbjct 249718 GATGGAAGAACACTTGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTAGTCTTG 249777 Query 110486 AGACTGCGAGGGGGAA 110501 || || |||| |||| Sbjct 249778 AGGCTTAGAGGTGGAA 249793 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 |||||||| || | || |||||||| ||||| || | ||| ||||| || || || Sbjct 257162 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCCGGTAAGCAACTAGAA 257103 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| ||||||| | || ||||||||||| || ||||||||||| | || | || || Sbjct 257102 GATGGCAGAACACTTGCCGATTACAACATCCAGAAAGAATCTACTCTTCATCTAGTCTTG 257043 Query 110486 AGACTGCGAGGGGGAA 110501 || || |||| |||| Sbjct 257042 AGGCTTAGAGGTGGAA 257027 >seq12446 Length=468528 Score = 84.2 bits (92), Expect = 2e-11 Identities = 208/308 (68%), Gaps = 12/308 (4%) Strand=Plus/Plus Query 34309 ACGATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAA 34368 |||| | |||||| || || || ||||| | |||| |||| |||| |||||| Sbjct 322538 ACGACAATCTCAGTTTCAGGATTCCCACATCCATAACACTGCACATACTTTTTGATGAAG 322597 Query 34369 CCATCAAGCAGGTCCTGTAACTTAACG-GAGTCGTGGGAGCCGTTGACGA-TGAATCGTT 34426 ||||| || ||||| || || | | | ||| || | || ||||| | |||| ||| Sbjct 322598 TTTTCAAGAAG-TCCTGCAAGTTTAGGAGTGTCATGAGCTCCATTGACAAGTGAA--GTT 322654 Query 34427 CGTTT-TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGG 34485 | | | || | ||||| | || ||||| || ||||| || || ||||| || || | | Sbjct 322655 CCTGTCTTCTCATCGAATTTCGACTGCGCACCGAGCTCACAACCAAAGTATTTAGTTGTG 322714 Query 34486 TAAATGGCCGGACGTC---CAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTC 34542 ||| || ||| ||| | | ||||| || || || ||||||||| | |||| Sbjct 322715 TAA---GCAGGAGGTCTCCCTAAGGCCTTAGCAATGTCAACCATGTTGACCACATTAGTC 322771 Query 34543 TTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAG 34602 |||||||| ||||| | ||||| | ||| | || | |||||| ||||| | ||| Sbjct 322772 TTGATGCCATTGCCTCTACCTTCAATCTTTGTCATCATTCTCGGCATCTTGTACCTATAG 322831 Query 34603 AACGCGTC 34610 || || || Sbjct 322832 AATGCATC 322839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412749463043816