Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq14462 127 3e-23 >seq14462 Length=746139 Score = 127 bits (140), Expect = 3e-23 Identities = 226/327 (69%), Gaps = 7/327 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || ||| || |||||| ||| ||| || |||||||| || || || Sbjct 137917 CCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAGTCCAGGCATGAGACCTCGTTTT 137858 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || |||| |||||||| || ||||| ||||| || || ||| ||| ||| Sbjct 137857 TTAAGCCAGAAAATGGAGCAGAAACTACCGGAGAAGAAGATACCTTCAACGCAGGCGAAG 137798 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | |||| ||||| ||||| || | || || || |||||| |||||||||| Sbjct 137797 GCTACGATACGCTCCGCAAAGGTTTG-AGATCC-----GTCGATCCAAGTCATCGCCCAT 137744 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | || || || || | || | || ||||| ||||||||||| ||||| | || Sbjct 137743 TGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGCGCGAAAGAGATGGTCTCTTTCT 137684 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||| |||||| || | || || || |||| || || || || || Sbjct 137683 TTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTATACATCTCCGAATGAATATTCTCA 137624 Query 794641 ATGGCGATCTGGAAGCCATA-AAAGCA 794666 || ||||| || || || || |||||| Sbjct 137623 ATCGCGATTTGAAATCCGTAGAAAGCA 137597 Score = 123 bits (136), Expect = 4e-22 Identities = 193/272 (71%), Gaps = 12/272 (4%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | ||| || || || |||||| || || || ||||| |||||||| Sbjct 137593 GCCTCCGATACCTGAACATCGGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCA 137534 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| ||||| | ||| |||||||| ||||| || ||| ||||| | | Sbjct 137533 TCAGAGGCGGCGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTTTAAA 137474 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCG----AGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 |||| | || ||| | | | || ||||| |||||||| |||||||| || Sbjct 137473 TTCTCCCAAT----CGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGA 137418 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAA 796385 ||||||||||| |||||||||||||| ||| || |||| | || ||||||| | ||| Sbjct 137417 CGCCTCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACATACAAAA 137358 Query 796386 GC-GATTGGGGTTCTCGCGT-AGCAGCGGCTC 796415 | | |||||| | | || || |||||||| Sbjct 137357 TCTGTCTGGGGT--TGGGGTAAGAAGCGGCTC 137328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914298469038968