Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq14413 102 6e-17 seq16023 96.9 3e-15 seq14499 89.7 4e-13 >seq14413 Length=739167 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| |||||| | || || |||||||| ||| | ||| ||| ||| Sbjct 403080 ATGCAAATCTTTGTGAAAACTCTCACTGGTAAAACCATCACCCTAGAAGTTGAGAGCTCA 403021 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| |||||| |||||||| || | || ||| || Sbjct 403020 -GACACCATTGACAATGTCAAAGCTAAGATTCAAGATAAAGAGGGTATCCCTCCGGACCA 402962 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||||||| | || ||||||||||| ||||| | || | || |||||||| Sbjct 402961 GCAGAGACTTATCTTCGCCGGTAAACAGCTCGAGGATGGTCGTACTCTAGCTGACTACAA 402902 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || ||||| || || | ||| ||||| | | ||| |||| || Sbjct 402901 CATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTTTGAGAGGTGG 402854 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || | || ||||||||||| || | || ||| | | Sbjct 402852 ATGCAAATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTTTAGAGGTTGAGAGTTCC 402793 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || ||| ||||| || |||||||| | || || ||| Sbjct 402792 GACACCATTGACAATGTCAAAGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 402733 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||| | ||| ||||||||||| || || | | || | || ||||||||| Sbjct 402732 CAGAGACTTATCTTTGCCGGTAAACAGCTAGAAGATGGCCGTACCCTTGCTGACTACAAC 402673 Query 107736 ATTCAAAAGGAGTCTAC 107752 || ||||||||||| || Sbjct 402672 ATCCAAAAGGAGTCCAC 402656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || ||||| ||| | || || ||||| || || |||| |||| ||| | Sbjct 403536 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAAACAATCACTCTCGAGGTGGAGAGCTCG 403477 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| || || || || | || ||| || Sbjct 403476 -GACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGAATTCCTCCGGACCA 403418 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| |||||||| | ||| ||||||||||| ||||| | | || | || |||||||| Sbjct 403417 GCAAAGACTTATCTTTGCCGGTAAACAGCTCGAGGATGGCCGCACCCTTGCAGACTACAA 403358 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| ||||| ||||| || Sbjct 403357 CATACAAAAAGAGTCCAC 403340 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || ||||| ||| | || || ||||| || || |||| |||| ||| | Sbjct 403764 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAAACAATCACTCTCGAGGTGGAGAGCTCG 403705 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| || || || || | || ||| || Sbjct 403704 -GACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGAATTCCTCCGGACCA 403646 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| |||||||| | ||| ||||||||||| ||||| | || | || |||||||| Sbjct 403645 GCAAAGACTTATCTTTGCCGGTAAACAGCTCGAGGATGGACGTACTCTTGCAGACTACAA 403586 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| ||||||||||| || Sbjct 403585 CATCCAAAAGGAGTCCAC 403568 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || ||||| ||| | || || ||||| || || |||| |||| ||| | Sbjct 404125 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAAACAATCACTCTCGAGGTGGAGAGCTCG 404066 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| || || || || | || ||| || Sbjct 404065 -GACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGAATTCCTCCGGACCA 404007 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| |||||||| | ||| ||||||||||| ||||| | || | || |||||||| Sbjct 404006 GCAAAGACTTATCTTTGCCGGTAAACAGCTCGAGGATGGACGTACTCTTGCAGACTACAA 403947 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| ||||||||||| || Sbjct 403946 CATCCAAAAGGAGTCCAC 403929 >seq16023 Length=121467 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || |||||||| |||| ||||| || |||||| | || ||| ||| Sbjct 25525 ATGCAAATCTTCGTCAAAACCCTAACGGGCAAGACGATTACCTTGGAGGTTGAGAGCTC- 25467 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| ||||| ||||| ||||| | || ||| || Sbjct 25466 CGACACCATCGACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGTATCCCTCCGGACCA 25407 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || |||||||| || ||||||| | || |||| |||||||| Sbjct 25406 GCAGAGGTTGATCTTCGCTGGTAAACAACTCGAGGACGGCCGTACCTTGGCTGACTACAA 25347 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || || ||||| ||| | ||| |||| Sbjct 25346 CATCCAGAAAGAGTCGACGCTCCACTTGGT 25317 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || |||||| | || || || ||||| ||| | || ||| ||| Sbjct 25753 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 25694 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || ||| ||||| ||||| || || | ||| |||||| Sbjct 25693 -GACACAATCGATAACGTTAAAGCTAAGATCCAGGATAAGGAGGGAATTCCCCCGGATCA 25635 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| ||| | || | ||| || || ||||| ||||| | | |||| |||| |||||||| Sbjct 25634 GCAAAGATTGATCTTTGCCGGAAAGCAGCTAGAGGATGGCCGAACATTGGCTGACTACAA 25575 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || ||||||||||| | ||| |||| Sbjct 25574 CATCCAGAAGGAGTCTACCCTCCACCTGGT 25545 >seq14499 Length=662897 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || ||||||||| | || ||||||||||| ||| | ||| ||| ||| Sbjct 223935 ATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTCT 223876 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| || |||||||| | || ||||| Sbjct 223875 -GACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAAGGGATCCCACCAGATCA 223817 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || ||||| || | || ||||||||||| ||||||| || | || |||||||| Sbjct 223816 ACAAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTACAA 223757 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| |||||||| || || Sbjct 223756 CATCCAAAAGGAATCAAC 223739 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || |||||| | || ||||| |||||||| |||| |||| ||| Sbjct 224391 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATTACTCTCGAGGTGGAGAGCTC- 224333 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || |||||| || || ||||| | || || || Sbjct 224332 CGACACCATCGATAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCA 224273 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||||||| | || || |||||||| || || | | || | || || ||||| Sbjct 224272 GCAGAGACTTATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTAGCCGATTACAA 224213 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||||||||||| || Sbjct 224212 TATTCAAAAGGAGTCAAC 224195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398787779672968