Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq17130 109 9e-19 seq14499 105 1e-17 >seq17130 Length=165301 Score = 109 bits (120), Expect = 9e-19 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | ||||| | || || |||||||| || |||| || ||| ||| Sbjct 19892 TGCAGATCTTCGTGAAAACTCTCACGGGGAAAACAATCACCCTTGAGGTTGAATCATCT- 19834 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || | ||||| ||| || || ||| || ||||| || ||||| || || Sbjct 19833 GATACAATCGACAATGTCAAATCGAAGATCCAAGACAAGGAAGGTATCCCACCGGACCAG 19774 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | ||||| || || |||||| |||| || || || ||| | ||||| ||| Sbjct 19773 CAACGGTTAATTTTCGCCGGAAAACAACTAGAAGACGGCAGGACATTAGCTGATTACAAT 19714 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || || || ||||| ||| | |||||||| | || ||||||||||| Sbjct 19713 ATCCAGAAGGAATCAACTCTTCATTTAGTTCTCCGTTTAAGAGGAGG 19667 >seq14499 Length=662897 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| || || | || || || | Sbjct 223934 TGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTCTG 223875 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || || ||| || ||| |||||||| || ||||| ||||||| Sbjct 223874 ACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAAGGGATCCCACCAGATCAAC 223815 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||| || || |||||||| | || || | | || | |||| || || | Sbjct 223814 AAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTACAACA 223755 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| || | ||||||||| | || |||||||| |||| Sbjct 223754 TCCAAAAGGAATCAACCCTTCATTTAGTACTTCGTTTAAGAGGTGGTA 223707 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| |||| || ||||| || || | || || ||| || Sbjct 223478 TGCAGATTTTCGTCAAAACCCTAACCGGTAAAACCATCACATTAGAAGTTGAAAGCTCCG 223419 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||||||| ||| || ||| |||||||| || ||||| || || | Sbjct 223418 ACACCATCGATAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAGC 223359 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||| || || || ||||| | || ||| | || ||| | || || |||| Sbjct 223358 AAAGACTCATCTTCGCCGGAAAACAGCTTGAAGATGGCCGTACCTTAGCTGACTACAATA 223299 Query 146212 TACAAAAAGAATCGACT 146228 ||||||| || || ||| Sbjct 223298 TACAAAAGGAGTCAACT 223282 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || ||||| || || ||||| ||||| | || || ||| | Sbjct 223250 TGCAGATTTTTGTTAAGACATTGACCGGTAAAACCATTACATTAGAAGTTGAAAGCTCGG 223191 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| ||| || || ||| ||||||||| || ||||| || || | Sbjct 223190 ATACTATTGATAATGTGAAAGCAAAGATCCAAGATAAAGAAGGTATCCCACCGGACCAGC 223131 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || || || || ||||| | || ||| | || | | |||||||||| Sbjct 223130 AGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACTCTTGCTGATTATAATA 223071 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | || ||||| |||||| | ||| Sbjct 223070 TTCAGAAAGAGTCGACTCTTCAT 223048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785986446511040