Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq17130 109 9e-19
seq14499 105 1e-17
>seq17130
Length=165301
Score = 109 bits (120), Expect = 9e-19
Identities = 162/227 (71%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090
|||| || ||| | ||||| | || || |||||||| || |||| || ||| |||
Sbjct 19892 TGCAGATCTTCGTGAAAACTCTCACGGGGAAAACAATCACCCTTGAGGTTGAATCATCT- 19834
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| || | ||||| ||| || || ||| || ||||| || ||||| || ||
Sbjct 19833 GATACAATCGACAATGTCAAATCGAAGATCCAAGACAAGGAAGGTATCCCACCGGACCAG 19774
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
||| | | ||||| || || |||||| |||| || || || ||| | ||||| |||
Sbjct 19773 CAACGGTTAATTTTCGCCGGAAAACAACTAGAAGACGGCAGGACATTAGCTGATTACAAT 19714
Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
|| || || ||||| ||| | |||||||| | || |||||||||||
Sbjct 19713 ATCCAGAAGGAATCAACTCTTCATTTAGTTCTCCGTTTAAGAGGAGG 19667
>seq14499
Length=662897
Score = 105 bits (116), Expect = 1e-17
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | ||||| | || || ||||| || || | || || || |
Sbjct 223934 TGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTCTG 223875
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | || || || ||| || ||| |||||||| || ||||| |||||||
Sbjct 223874 ACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAAGGGATCCCACCAGATCAAC 223815
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|||||||||| || || |||||||| | || || | | || | |||| || || |
Sbjct 223814 AAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTACAACA 223755
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
| ||||| ||||| || | ||||||||| | || |||||||| ||||
Sbjct 223754 TCCAAAAGGAATCAACCCTTCATTTAGTACTTCGTTTAAGAGGTGGTA 223707
Score = 95.1 bits (104), Expect = 2e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | ||||| |||| || ||||| || || | || || ||| ||
Sbjct 223478 TGCAGATTTTCGTCAAAACCCTAACCGGTAAAACCATCACATTAGAAGTTGAAAGCTCCG 223419
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || || | ||||||||| ||| || ||| |||||||| || ||||| || || |
Sbjct 223418 ACACCATCGATAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAGC 223359
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|||||||||| || || || ||||| | || ||| | || ||| | || || ||||
Sbjct 223358 AAAGACTCATCTTCGCCGGAAAACAGCTTGAAGATGGCCGTACCTTAGCTGACTACAATA 223299
Query 146212 TACAAAAAGAATCGACT 146228
||||||| || || |||
Sbjct 223298 TACAAAAGGAGTCAACT 223282
Score = 87.8 bits (96), Expect = 3e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | || ||||| || || ||||| ||||| | || || ||| |
Sbjct 223250 TGCAGATTTTTGTTAAGACATTGACCGGTAAAACCATTACATTAGAAGTTGAAAGCTCGG 223191
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| | ||||| ||| || || ||| ||||||||| || ||||| || || |
Sbjct 223190 ATACTATTGATAATGTGAAAGCAAAGATCCAAGATAAAGAAGGTATCCCACCGGACCAGC 223131
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| ||| | || || || || ||||| | || ||| | || | | ||||||||||
Sbjct 223130 AGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACTCTTGCTGATTATAATA 223071
Query 146212 TACAAAAAGAATCGACTATCCAT 146234
| || ||||| |||||| | |||
Sbjct 223070 TTCAGAAAGAGTCGACTCTTCAT 223048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785986446511040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |