Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_023584.1
Length=170438
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 587 8e-163
seq17927 531 6e-146
seq17628 107 2e-18
>seq11797
Length=28381
Score = 587 bits (650), Expect = 8e-163
Identities = 725/989 (73%), Gaps = 2/989 (0%)
Strand=Plus/Minus
Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110
||||| | ||| |||| ||| | |||||| | || |||| ||||| ||||| |
Sbjct 1400 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1341
Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGCTTCATTGTTGCATTCGTAGCAGCACCT 157170
||||| || || || | | |||||| | || ||| | ||||| | || || |||
Sbjct 1340 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCCT 1281
Query 157171 CCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAAC 157230
|| || ||||| || |||||||| ||||| ||| |||| ||||| | || || |||||
Sbjct 1280 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1221
Query 157231 ATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATC 157290
|| || || |||||| || ||||| |||| || |||||| | || || ||||| ||
Sbjct 1220 ATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAATT 1161
Query 157291 TGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTC 157350
|||||||| ||||| ||||||| ||||| |||||||||||||||| |||| | ||
Sbjct 1160 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1101
Query 157351 TTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 157410
| ||||| | | || | | |||||||| ||||||||||||||| || ||||
Sbjct 1100 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1041
Query 157411 TTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCA 157470
|| |||||||| || ||||| |||||| || || || || || || ||||| | ||||
Sbjct 1040 TTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCA 981
Query 157471 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 157530
|| ||| | |||||||| | |||||||| || || |||| ||||||||| || |||
Sbjct 980 GTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATC 921
Query 157531 TCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCG 157590
||||||||||| |||| ||| | || |||||||| ||||| || ||||||||||| ||
Sbjct 920 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCCA 861
Query 157591 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGA 157650
|| |||||| | || || ||||| |||||||| || || | || ||||||||| ||
Sbjct 860 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 801
Query 157651 AGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATGG 157709
| | || |||| || | ||| || | ||||| || |||| || || || | ||
Sbjct 800 TCTTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 742
Query 157710 TTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGG 157769
||||| ||||||||||||||||| || |||||||| || ||||| || ||||| || ||
Sbjct 741 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 682
Query 157770 TCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGC 157829
|| ||||||||||||| ||| |||||||| | | | || |||||| | ||
Sbjct 681 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 622
Query 157830 CGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 157889
|| ||||| || || || || ||||| ||||| | || | || || |||||||| ||
Sbjct 621 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTAA 562
Query 157890 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 157949
| | || || ||||| |||||||| || | ||||| |||| || ||||| | || ||
Sbjct 561 CTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAATAC 502
Query 157950 CTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158009
||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| ||
Sbjct 501 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 442
Query 158010 ACACAACTTCCCACTGGATCTTGCTGCTG 158038
||||||||||| || || || |||| ||
Sbjct 441 TCACAACTTCCCTCTAGACCTAGCTGTTG 413
>seq17927
Length=56337
Score = 531 bits (588), Expect = 6e-146
Identities = 726/1011 (72%), Gaps = 2/1011 (0%)
Strand=Plus/Plus
Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834
||||| || | || |||||| | |||| || ||||||||||| || ||||||||
Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063
Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894
|| | || | || ||| ||| ||||| | || |||||| | || || || || ||
Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123
Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAAACTTTCTT 158954
| || |||||||| |||||| | || | ||||||| | || ||| || ||| |
Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 4183
Query 158955 ACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 159014
|| || || ||||| ||||| ||| || | | | ||||| | || | || ||||||
Sbjct 4184 ACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGT 4243
Query 159015 CCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGTG 159074
||||| || ||||| ||||| | ||| ||| | || || || |||| ||||||
Sbjct 4244 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 4303
Query 159075 GCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACG- 159133
|| |||||||| || || || |||| ||||| ||| | || || |||||||| || ||
Sbjct 4304 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 4363
Query 159134 TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 159193
||| || | | || || || ||||| || || ||||||||||| ||||||||||||||
Sbjct 4364 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 4422
Query 159194 CAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGG 159253
|||||||| || || ||||| ||||| || ||||||| || || || |||||
Sbjct 4423 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 4482
Query 159254 GGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAA 159313
|| || || || || | || | ||||| | |||||||| || ||||||||| | ||
Sbjct 4483 TGTAGCGGCTATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 4542
Query 159314 CCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCA 159373
||| || |||||||||||||| || ||| | || || | || || |||| ||||||||
Sbjct 4543 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 4602
Query 159374 TGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGC 159433
||| | || || |||||||| |||| || ||||| || ||||| || || ||
Sbjct 4603 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 4662
Query 159434 GTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 159493
||| | ||||||||| || || |||||||| |||||||| || |||||||| |||||
Sbjct 4663 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 4722
Query 159494 GCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGT 159553
|| ||||| || |||| ||||| || || || ||| | |||||||||||||| |||||
Sbjct 4723 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 4782
Query 159554 GCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCG 159613
|| || | ||| |||||| | |||| | | ||||| ||| | || || ||
Sbjct 4783 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 4842
Query 159614 TGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTT 159673
|| || || || || || || ||| | ||||| |||||||| |||||||| || ||
Sbjct 4843 CGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 4902
Query 159674 CTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCA 159733
|||||| || || |||||| | || ||||| | ||||||||| |||| || |||||
Sbjct 4903 CTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 4962
Query 159734 ACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784
|| ||||||||| | || ||||| || || ||||||||| | || |||||
Sbjct 4963 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 5013
>seq17628
Length=99897
Score = 107 bits (118), Expect = 2e-18
Identities = 146/201 (73%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 158213 GAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACTACTCTTGT 158272
||||| ||||||||||| |||||||| ||||||||||||||||| | ||||| ||
Sbjct 84536 GAGGACCAATACATTCTCGACGCAGCTGAAGAAGCAGGAGTTGAACTGCCTTACTCGTGC 84477
Query 158273 CGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGT 158332
| ||||| || || | | |||||||| || || | | |||| ||||||||||
Sbjct 84476 AGAGCTGGAGCGTGTTGCACGTGTGCAGGGAAGATCGAAAAAGGAAGTGTTGATCAGTCA 84417
Query 158333 GATCAGTCGTTCCTAGACGATGATCAAATCGCAGCA-GGATTTGTTCTTACGTGTGTAGC 158391
||| |||||||| || ||| || |||| || | || | || || || ||||||||
Sbjct 84416 GATGGTTCGTTCCTTGATGATAATATGATCG-AGAATGGCTACGTACTGACTTGTGTAGC 84358
Query 158392 ATATCCAACATCTGATTGTGT 158412
|| || ||| ||||||||
Sbjct 84357 TTACCCGCAATCAGATTGTGT 84337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545148786872960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |