Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq17927 554 5e-153 seq11797 545 3e-150 seq14836 127 2e-24 seq17628 91.5 2e-13 seq15851 84.2 3e-11 >seq17927 Length=56337 Score = 554 bits (614), Expect = 5e-153 Identities = 727/1004 (72%), Gaps = 2/1004 (0%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | |||| ||||| || ||||| ||||||||||| || | || Sbjct 4014 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 4073 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||| ||| |||| | || |||||| | || || ||| | ||||| || | Sbjct 4074 TTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 4133 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 179128 |||| || ||||| | || ||||||||| | |||||| || ||| | || || || | Sbjct 4134 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGG 4193 Query 179129 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179188 | || || |||||| || | | | ||||| | | |||| ||||||||||| | | Sbjct 4194 TTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCAC 4253 Query 179189 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACG 179248 | || |||| || ||||| ||| | || || || |||| ||| || |||||||||| Sbjct 4254 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACG 4313 Query 179249 GTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGT 179307 | || ||||| |||| || || ||| | ||||| |||||||| || || ||| || | Sbjct 4314 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 4373 Query 179308 ATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTT 179367 | || ||||| ||||| || || || ||||||| ||||| || || ||| ||| || Sbjct 4374 -TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTC 4432 Query 179368 CTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCG 179427 || || || ||||| || ||||| |||||||||||||||| |||||||| ||||| Sbjct 4433 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 4492 Query 179428 ATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCAC 179487 || ||| |||| | || || || ||||| || || || |||||| | ||||| ||||| Sbjct 4493 ATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 4552 Query 179488 ATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACT 179547 ||||||||||| || ||| | ||||| | |||||||| | ||||||||||| | ||| Sbjct 4553 ATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACT 4612 Query 179548 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCT 179607 ||||| ||||| || | ||||||||| || ||||| ||||| || || || | Sbjct 4613 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 4672 Query 179608 ACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTC 179667 || |||| || || || ||||| ||||| || || ||||| |||||||| || ||||| Sbjct 4673 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 4732 Query 179668 GGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATG 179727 |||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || | Sbjct 4733 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACT 4792 Query 179728 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGAT 179787 ||| | ||| | | || |||| | | || |||||| | || || || || ||||| Sbjct 4793 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGAC 4852 Query 179788 TTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAG 179847 ||||| || || ||| | ||||| |||||||| || || ||||| ||||| || || Sbjct 4853 TTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAAA 4912 Query 179848 AACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAA 179907 || |||||| | || ||||| | ||||||||| |||| || ||||| || |||||| Sbjct 4913 AATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 4972 Query 179908 AACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||| | || ||||| || || || ||||| |||| ||||| || Sbjct 4973 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016 >seq11797 Length=28381 Score = 545 bits (604), Expect = 3e-150 Identities = 698/958 (73%), Gaps = 3/958 (0%) Strand=Plus/Minus Query 177585 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177644 ||||| || || | || ||||| || || ||||||| || || | ||| | |||||| Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1314 Query 177645 ATCTGCTTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAA 177704 | || || |||| || | |||||||| || || || || || || || |||||| Sbjct 1313 TCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1254 Query 177705 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 177764 || || |||| || || | || || ||||| || || || |||||| || | || || Sbjct 1253 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTACT 1194 Query 177765 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 177824 || || || ||| | || || || || || |||||||| ||||| ||||||| ||| Sbjct 1193 TCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGG 1134 Query 177825 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCA 177884 || || ||||||||||||| |||| | || | ||||| | | || | | Sbjct 1133 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1074 Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944 |||||||| ||||||||||||||| | |||| | |||||||| || ||||| |||| Sbjct 1073 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 1014 Query 177945 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCA 178003 ||||| || || ||||||||||| || | ||||| ||||| | |||||||| | ||||| Sbjct 1013 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGT-TTTCTTGATCTATCCTATTGGTCA 955 Query 178004 AGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 178063 ||| || || |||| ||||||||| || |||||||||||||| |||| |||| |||| Sbjct 954 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 895 Query 178064 ATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGT 178123 |||||| || || || || || ||||||||||| || |||||| | ||||| ||||| || Sbjct 894 ATTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 835 Query 178124 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCG 178183 |||||| || || || || |||||||||||| | | || |||||| | || | Sbjct 834 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAG 775 Query 178184 TGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC 178243 || || ||||||| ||| || || | ||||||| ||||| |||||||||||||| Sbjct 774 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 715 Query 178244 ATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTT 178303 || ||||| || || || |||||||| || || || ||||||||||||||||| || Sbjct 714 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 655 Query 178304 CAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 178363 |||||| || ||||| | || |||||| | || || ||||| ||||| || || ||||| Sbjct 654 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 595 Query 178364 CACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178423 || || | ||| | || |||||||||||| | ||||||||||| |||||||| || Sbjct 594 TACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATC 535 Query 178424 CATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGG 178483 | | || | ||||| ||||| | || || ||||| || | | |||||||| Sbjct 534 TGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 475 Query 178484 TCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGATCTTGC 178541 || || |||||||| ||||| ||| | ||| || || |||||||| || || || || Sbjct 474 CCTTGGTATGGAAGTTATGCATGAACGTAAT-GCTCACAACTTCCCTCTAGACCTAGC 418 >seq14836 Length=433140 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 138518 TTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTC 138577 |||| |||| ||| ||| ||| | ||||| |||||||| ||||| || ||||| | | Sbjct 174398 TTGAATGTGATGACGATGTCTACGTTCTTGACGCTGCTGAAGAAGCTGGAATTGACTTGC 174457 Query 138578 CCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTG 138637 | | ||| || ||| ||||| | ||||| | ||||||||||||| | || || | | Sbjct 174458 CTTTCTCTTGCCGTTCTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCTGGTAATA 174517 Query 138638 TAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGA 138697 | || ||| | || | |||||||||||||| || || || || || | | || | | Sbjct 174518 TTGACCAGACAGATAATCAGTTCCTTGATGATGATCAGATGGCTGCTGGCTATGTCCTCA 174577 Query 138698 CTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGA 138752 |||| ||||| ||||| || || ||| | | ||||||||| | ||||| || || Sbjct 174578 CTTGTGTAGCTTACCCTACTTCTGATGTTGTCATTGAAACTCACAAAGAAGAAGA 174632 >seq17628 Length=99897 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 138529 GATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGT 138588 || || || ||||| || || || ||||| |||||||| |||| || || ||||| || Sbjct 84536 GAGGACCAATACATTCTCGACGCAGCTGAAGAAGCAGGAGTTGAACTGCCTTACTCGTGC 84477 Query 138589 CGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCT 138648 | ||||| || |||| || ||||| || || | | |||||| ||| |||||||| Sbjct 84476 AGAGCTGGAGCGTGTTGCACGTGTGCAGGGAAGATCGAAAAAGGAAGTGTTGATCAGTCA 84417 Query 138649 GACCAGTCTTTCCTTGATGATGACCAAATTGCAGCA-GGATTTATCATGACTTGCGTAGC 138707 || || |||||||||||| | || | || | || | | ||||||| ||||| Sbjct 84416 GATGGTTCGTTCCTTGATGATAATATGATCG-AGAATGGCTACGTACTGACTTGTGTAGC 84358 Query 138708 ATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGA 138746 ||||| ||| |||||| | ||| | || | ||||| Sbjct 84357 TTACCCGCAATCAGATTGTGTGATTCATACACACAAAGA 84319 >seq15851 Length=433742 Score = 84.2 bits (92), Expect = 3e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 |||| || || ||||||||||| || ||||| |||||||| |||| | || |||| | Sbjct 393558 CTGACGACCAATACATCCTTGAAGCAGCTGAAGAAGCAGGACTTGACATGCCTCACTCAT 393617 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 | |||||||||||||| || || ||||| | | || | || ||||| || |||| Sbjct 393618 GCAAGGCTGGTGCATGTTCCACATGCGCTGGACAGATTGTGAAGGGTACTGTTGACCAGT 393677 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706 |||| || | ||||| || ||||| || | ||| | | ||||||| |||| Sbjct 393678 CTGAGGGTTCGTATCTTGAAGAAGACCAGATGGAGAGAGGTTACGTACTGACTTGTGTAG 393737 Query 138707 CATACCCCACA 138717 | || ||| || Sbjct 393738 C-TATCCCGCA 393747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605528562777920