Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_023587.1
Length=189311
Score E
Sequences producing significant alignments: (Bits) Value
seq17927 554 5e-153
seq11797 545 3e-150
seq14836 127 2e-24
seq17628 91.5 2e-13
seq15851 84.2 3e-11
>seq17927
Length=56337
Score = 554 bits (614), Expect = 5e-153
Identities = 727/1004 (72%), Gaps = 2/1004 (0%)
Strand=Plus/Plus
Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008
||||||||||| | |||| ||||| || ||||| ||||||||||| || | ||
Sbjct 4014 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 4073
Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068
|||| ||| ||| |||| | || |||||| | || || ||| | ||||| || |
Sbjct 4074 TTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 4133
Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 179128
|||| || ||||| | || ||||||||| | |||||| || ||| | || || || |
Sbjct 4134 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGG 4193
Query 179129 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179188
| || || |||||| || | | | ||||| | | |||| ||||||||||| | |
Sbjct 4194 TTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCAC 4253
Query 179189 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACG 179248
| || |||| || ||||| ||| | || || || |||| ||| || ||||||||||
Sbjct 4254 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACG 4313
Query 179249 GTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGT 179307
| || ||||| |||| || || ||| | ||||| |||||||| || || ||| || |
Sbjct 4314 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 4373
Query 179308 ATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTT 179367
| || ||||| ||||| || || || ||||||| ||||| || || ||| ||| ||
Sbjct 4374 -TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTC 4432
Query 179368 CTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCG 179427
|| || || ||||| || ||||| |||||||||||||||| |||||||| |||||
Sbjct 4433 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 4492
Query 179428 ATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCAC 179487
|| ||| |||| | || || || ||||| || || || |||||| | ||||| |||||
Sbjct 4493 ATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 4552
Query 179488 ATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACT 179547
||||||||||| || ||| | ||||| | |||||||| | ||||||||||| | |||
Sbjct 4553 ATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACT 4612
Query 179548 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCT 179607
||||| ||||| || | ||||||||| || ||||| ||||| || || || |
Sbjct 4613 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 4672
Query 179608 ACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTC 179667
|| |||| || || || ||||| ||||| || || ||||| |||||||| || |||||
Sbjct 4673 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 4732
Query 179668 GGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATG 179727
|||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || |
Sbjct 4733 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACT 4792
Query 179728 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGAT 179787
||| | ||| | | || |||| | | || |||||| | || || || || |||||
Sbjct 4793 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGAC 4852
Query 179788 TTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAG 179847
||||| || || ||| | ||||| |||||||| || || ||||| ||||| || ||
Sbjct 4853 TTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAAA 4912
Query 179848 AACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAA 179907
|| |||||| | || ||||| | ||||||||| |||| || ||||| || ||||||
Sbjct 4913 AATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 4972
Query 179908 AACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951
||| | || ||||| || || || ||||| |||| ||||| ||
Sbjct 4973 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016
>seq11797
Length=28381
Score = 545 bits (604), Expect = 3e-150
Identities = 698/958 (73%), Gaps = 3/958 (0%)
Strand=Plus/Minus
Query 177585 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177644
||||| || || | || ||||| || || ||||||| || || | ||| | ||||||
Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1314
Query 177645 ATCTGCTTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAA 177704
| || || |||| || | |||||||| || || || || || || || ||||||
Sbjct 1313 TCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1254
Query 177705 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 177764
|| || |||| || || | || || ||||| || || || |||||| || | || ||
Sbjct 1253 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTACT 1194
Query 177765 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 177824
|| || || ||| | || || || || || |||||||| ||||| ||||||| |||
Sbjct 1193 TCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGG 1134
Query 177825 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCA 177884
|| || ||||||||||||| |||| | || | ||||| | | || | |
Sbjct 1133 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1074
Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944
|||||||| ||||||||||||||| | |||| | |||||||| || ||||| ||||
Sbjct 1073 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 1014
Query 177945 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCA 178003
||||| || || ||||||||||| || | ||||| ||||| | |||||||| | |||||
Sbjct 1013 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGT-TTTCTTGATCTATCCTATTGGTCA 955
Query 178004 AGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 178063
||| || || |||| ||||||||| || |||||||||||||| |||| |||| ||||
Sbjct 954 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 895
Query 178064 ATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGT 178123
|||||| || || || || || ||||||||||| || |||||| | ||||| ||||| ||
Sbjct 894 ATTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 835
Query 178124 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCG 178183
|||||| || || || || |||||||||||| | | || |||||| | || |
Sbjct 834 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAG 775
Query 178184 TGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC 178243
|| || ||||||| ||| || || | ||||||| ||||| ||||||||||||||
Sbjct 774 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 715
Query 178244 ATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTT 178303
|| ||||| || || || |||||||| || || || ||||||||||||||||| ||
Sbjct 714 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 655
Query 178304 CAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 178363
|||||| || ||||| | || |||||| | || || ||||| ||||| || || |||||
Sbjct 654 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 595
Query 178364 CACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178423
|| || | ||| | || |||||||||||| | ||||||||||| |||||||| ||
Sbjct 594 TACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATC 535
Query 178424 CATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGG 178483
| | || | ||||| ||||| | || || ||||| || | | ||||||||
Sbjct 534 TGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 475
Query 178484 TCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGATCTTGC 178541
|| || |||||||| ||||| ||| | ||| || || |||||||| || || || ||
Sbjct 474 CCTTGGTATGGAAGTTATGCATGAACGTAAT-GCTCACAACTTCCCTCTAGACCTAGC 418
>seq14836
Length=433140
Score = 127 bits (140), Expect = 2e-24
Identities = 169/235 (72%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 138518 TTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTC 138577
|||| |||| ||| ||| ||| | ||||| |||||||| ||||| || ||||| | |
Sbjct 174398 TTGAATGTGATGACGATGTCTACGTTCTTGACGCTGCTGAAGAAGCTGGAATTGACTTGC 174457
Query 138578 CCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTG 138637
| | ||| || ||| ||||| | ||||| | ||||||||||||| | || || | |
Sbjct 174458 CTTTCTCTTGCCGTTCTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCTGGTAATA 174517
Query 138638 TAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGA 138697
| || ||| | || | |||||||||||||| || || || || || | | || | |
Sbjct 174518 TTGACCAGACAGATAATCAGTTCCTTGATGATGATCAGATGGCTGCTGGCTATGTCCTCA 174577
Query 138698 CTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGA 138752
|||| ||||| ||||| || || ||| | | ||||||||| | ||||| || ||
Sbjct 174578 CTTGTGTAGCTTACCCTACTTCTGATGTTGTCATTGAAACTCACAAAGAAGAAGA 174632
>seq17628
Length=99897
Score = 91.5 bits (100), Expect = 2e-13
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 138529 GATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGT 138588
|| || || ||||| || || || ||||| |||||||| |||| || || ||||| ||
Sbjct 84536 GAGGACCAATACATTCTCGACGCAGCTGAAGAAGCAGGAGTTGAACTGCCTTACTCGTGC 84477
Query 138589 CGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCT 138648
| ||||| || |||| || ||||| || || | | |||||| ||| ||||||||
Sbjct 84476 AGAGCTGGAGCGTGTTGCACGTGTGCAGGGAAGATCGAAAAAGGAAGTGTTGATCAGTCA 84417
Query 138649 GACCAGTCTTTCCTTGATGATGACCAAATTGCAGCA-GGATTTATCATGACTTGCGTAGC 138707
|| || |||||||||||| | || | || | || | | ||||||| |||||
Sbjct 84416 GATGGTTCGTTCCTTGATGATAATATGATCG-AGAATGGCTACGTACTGACTTGTGTAGC 84358
Query 138708 ATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGA 138746
||||| ||| |||||| | ||| | || | |||||
Sbjct 84357 TTACCCGCAATCAGATTGTGTGATTCATACACACAAAGA 84319
>seq15851
Length=433742
Score = 84.2 bits (92), Expect = 3e-11
Identities = 134/191 (70%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586
|||| || || ||||||||||| || ||||| |||||||| |||| | || |||| |
Sbjct 393558 CTGACGACCAATACATCCTTGAAGCAGCTGAAGAAGCAGGACTTGACATGCCTCACTCAT 393617
Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646
| |||||||||||||| || || ||||| | | || | || ||||| || ||||
Sbjct 393618 GCAAGGCTGGTGCATGTTCCACATGCGCTGGACAGATTGTGAAGGGTACTGTTGACCAGT 393677
Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706
|||| || | ||||| || ||||| || | ||| | | ||||||| ||||
Sbjct 393678 CTGAGGGTTCGTATCTTGAAGAAGACCAGATGGAGAGAGGTTACGTACTGACTTGTGTAG 393737
Query 138707 CATACCCCACA 138717
| || ||| ||
Sbjct 393738 C-TATCCCGCA 393747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605528562777920
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