Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq16577 120 2e-22 seq17130 107 1e-18 seq12257 105 4e-18 seq16023 98.7 7e-16 seq14413 98.7 7e-16 seq14499 84.2 1e-11 >seq16577 Length=433012 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | ||| || || || || || ||||||||||||| Sbjct 33625 CACCACCACGTAGACGAAGAACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGG 33684 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || || |||| || | ||||||||| || ||||||||||| |||||||| | | Sbjct 33685 CAAGAGTACGACCGTCTTCGAGTTGTTTTCCAGCGAAAATCAAACGTTGCTGATCCGGTG 33744 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | |||||||| || ||| || | || |||| ||| | || || |||||| Sbjct 33745 GAATTCCTTCTTTATCCTGAATCTT-GGCTTTGACATTGTCGATTGTATCTGATGATTCG 33803 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || ||||||||||| |||| ||||| || ||||||||||| Sbjct 33804 ACTTCAAGAGTTATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 33853 >seq17130 Length=165301 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| ||||| | || ||||| ||||| || || || || |||||||| | Sbjct 19667 CCTCCTCTTAAACGGAGAACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCT 19726 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| | |||| || | |||||||||||| ||||| || || ||||| || | || Sbjct 19727 AATGTCCTGCCGTCTTCTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGGG 19786 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || ||| | || |||| ||| | || || |||||| || Sbjct 19787 ATACCTTCCTTGTCTTGGATCTTC-GATTTGACATTGTCGATTGTATCAGATGATTCAAC 19845 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || || | ||||| || ||||||||||| Sbjct 19846 CTCAAGGGTGATTGTTTTCCCCGTGAGAGTTTTCACGAAGATCTGCAT 19893 >seq12257 Length=1143886 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||||||||| | ||||| || || || || || || ||||||||||| | Sbjct 1016191 CACCTCCTCTCAAACGGAGAACCAAGTGAAGCGTTGATTCCTTCTGGATGTTGTAATCCG 1016250 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| || | |||| |||||||| |||||||| || ||||| || |||||||| | | Sbjct 1016251 CGAGAGTTCTACCGTCCTCCAATTGCTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTG 1016310 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || |||| |||| || | || || ||||| Sbjct 1016311 GGATGCCTTCCTTGTCCTGGATCTTGGCTTTC-ACATTATCGATCGTATCAGAGGATTCA 1016369 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || |||| ||||| || || |||||||| Sbjct 1016370 ACCTCTAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 1016419 >seq16023 Length=121467 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || ||||| || |||||| ||| || || |||||||| |||| Sbjct 24842 ACCACCACGGAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 24901 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | ||||| || || || ||||| | |||||| || | || Sbjct 24902 TAGGGTACGACCGTCCTCGAGCTGTTTGCCAGCGAAGATCAATCTCTGCTGGTCCGGTGG 24961 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||| ||||| ||||| || | | | ||| | |||||| ||| | Sbjct 24962 GATACCTTCCTTGTCCTGGATTTTAGCCTTGA-CGTTGTCGATGGTGTCAGAGCTC---T 25017 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | ||||| || || || ||||| || || ||||||||||||||| Sbjct 25018 CCACCTCCAAAGTGATGGTCTTTCCCGTTAAAGTCTTCACAAAGATCTGCATA 25070 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || || ||| || || |||||||| |||| Sbjct 24614 ACCACCACGTAGACGAAGGACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGC 24673 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | || || ||||| || || | ||| ||||| || | || Sbjct 24674 TAAAGTGCGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGTTGCTGGTCCGGTGG 24733 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | || |||||||| ||||| ||| ||| | ||| | |||||| ||| | Sbjct 24734 GATTCCCTCTTTGTCCTGGATTTTGGCTTT-AACGTTGTCGATGGTGTCAGAGCTC---T 24789 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| ||||| ||||| || || || ||||| || |||||||||||| Sbjct 24790 CAACCTCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATCTGCATA 24842 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || ||||| || || || ||| || || ||||||||||| | Sbjct 25070 ACCACCACGTAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGC 25129 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || ||||||||||| ||||| | |||||| || | || Sbjct 25130 TAGAGTACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGGGG 25189 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || || || ||| | ||| | ||| ||| ||||| Sbjct 25190 GATTCCCTCCTTGTCTTGGATCTT-TGCTTTAACGTTGTCGATGGTATCGGAGCTTTCCA 25248 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || || ||||| || ||||| ||||| Sbjct 25249 CCTCCAAGGTGATGGTCTTGCCCGTCAAGGTTTTAACGAAGATTTGCAT 25297 >seq14413 Length=739167 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||||| ||||| || ||||| || || || ||||||||||| | Sbjct 402397 ACCACCACGGAGACGTAGCACCAGGTGAAGAGTTGATTCCTTCTGAATGTTGTAATCTGC 402456 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | |||||||| ||||| |||||||| ||||| || | || Sbjct 402457 AAGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGCTGGTCCGGAGG 402516 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| || ||||| ||| || | || |||| ||| | |||||| ||| | Sbjct 402517 AATACCCTCCTTGTCTTGAATCTT-AGCTTTTACATTGTCAATGGTGTCTGAGCT---CT 402572 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| ||||| || || | || |||||||| ||||||||| Sbjct 402573 CAACTTCTAGAGTGATGGTTTTGCCGGTAAGGGTCTTTACAAAAATCTGCATA 402625 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||||||| | |||||| || || ||| || || || |||||||| || | Sbjct 402853 ACCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGC 402912 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | ||||| ||||| || || | | |||||| || | || Sbjct 402913 TAGAGTACGACCATCCTCGAGCTGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGG 402972 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| ||||| || ||| || | || |||| ||| | |||||| ||| | Sbjct 402973 GATACCCTCTTTATCTTGAATCTT-AGCTTTGACATTGTCAATGGTGTCTGAGCT---CT 403028 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| |||||||| || | ||||| |||||||| |||||| Sbjct 403029 CAACTTCTAGGGTGATGGTTTTACCAGTGAGAGTTTTCACAAAGATTTGCATA 403081 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/208 (70%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || || |||||||| | || ||||| |||| || | |||| Sbjct 402194 TGAAGAGTAGACTCCTTCTGGATATTGTAATCCGCAAGAGTGCGACCGTCTTCAAGTTGT 402253 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || |||||||| || | | |||||| ||| | || | ||||| ||||| ||| || Sbjct 402254 TTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTA 402313 Query 33667 TGTTTCAACATAGTCAC-GGTGTCGCTTGA---TTCCACGTCAACCGTGATCGTTTTACC 33722 || ||| | |||| |||||| ||| ||| || || | || || || || || Sbjct 402314 GCCTT-AACGTTGTCAATGGTGTC---TGAGCTTTCAACTTCCAAGGTAATAGTCTTGCC 402369 Query 33723 TGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || || ||||| |||||||||||| Sbjct 402370 TGTCAAAGTCTTTACGAAGATCTGCATA 402397 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||| | ||| || ||| ||| ||||| |||||||| || | Sbjct 402625 ACCACCACGGAGACGAAGCACAAGATGGAGTGTGGACTCCTTTTGGATGTTGTAGTCAGC 402684 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | ||||| |||||||| || | | |||||| ||| | || Sbjct 402685 AAGGGTACGGCCATCTTCTAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGG 402744 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || | || |||| ||| | ||||||| || | Sbjct 402745 GATTCCTTCTTTGTCTTGGATCTT-AGCTTTGACATTGTCAATGGTGTCGGAACTCTCAA 402803 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || | || |||||||| || |||||| Sbjct 402804 CCTCTAAAGTGATGGTTTTGCCGGTAAGGGTCTTTACAAAAATTTGCATA 402853 >seq14499 Length=662897 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||| || ||||| ||| |||||||| ||||| || | Sbjct 223252 ACCACCACGGAGACGCAGGACCAGGTGAAGAGTTGACTCCTTTTGTATATTGTAGTCAGC 223311 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | ||||||||||| || || | | ||||| ||| | || Sbjct 223312 TAAGGTACGGCCATCTTCAAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGG 223371 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || | || |||| || | ||||||| ||| | Sbjct 223372 GATACCTTCTTTGTCTTGGATCTT-AGCTTTTACATTATCGATGGTGTCGGAGCTTTCAA 223430 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| |||| ||||| || || ||||||||| Sbjct 223431 CTTCTAATGTGATGGTTTTACCGGTTAGGGTTTTGACGAAAATCTGCATA 223480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328630640663040