Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq11797 598 1e-166 >seq11797 Length=28381 Score = 598 bits (662), Expect = 1e-166 Identities = 715/961 (74%), Gaps = 10/961 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 1315 Query 19592 ATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 || | || ||||| ||||| ||||| ||||| ||||| || |||||||| || || || Sbjct 1314 TTCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1255 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || |||||||| |||||||| || || || || || | |||| | Sbjct 1254 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTAC 1195 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || ||||| | || || |||||||||||||||||| || |||||||| Sbjct 1194 TTCTGCA--GCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAA 1137 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||||| |||||||| || || | |||| | || | ||||| | |||| | | Sbjct 1136 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 1077 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||| ||||| || |||||||||||||| | || | || ||| | ||||||||| | Sbjct 1076 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCT 1017 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947 ||||| || || ||||| |||||||| || |||| || ||||| | |||| || |||| Sbjct 1016 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGT-TTTCTTGATCTATCCTATTGG 958 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 ||| || ||||| || |||| ||||||| | || ||||| ||||| ||||||| |||| | Sbjct 957 TCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGAT 898 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 |||||||| || || ||||||||||| |||||||| || |||||| | ||||| ||||| Sbjct 897 TGTATTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 838 Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG- 20126 ||||||||| || || ||||| ||||| ||||| ||||| ||| || | || | ||| Sbjct 837 TGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-TTTGGTAACTTCTAGTTTGA 779 Query 20127 TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAG 20186 | | || || || ||| | ||| | || | ||||||| || || |||||||||| Sbjct 778 TCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAG 719 Query 20187 AGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTT 20246 | || || ||||| ||||| ||||||||||| ||||| || |||||||||||||| ||| Sbjct 718 AAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 659 Query 20247 CTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTT 20306 |||||||||| |||||| |||| |||||| | || || |||||||| ||||| |||| Sbjct 658 GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTT 599 Query 20307 GGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACC 20366 |||| |||| || || || ||| ||||| ||||| | || || ||||| || |||| Sbjct 598 GGTTTACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACC 539 Query 20367 AGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTG 20426 | || | | || | | || ||||| ||| ||||||||||||| ||| | || |||| Sbjct 538 AATCTGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTG 479 Query 20427 CTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTG 20486 |||| || || | || || ||||||||||| |||||||| |||||||| || ||||| | Sbjct 478 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAG 419 Query 20487 C 20487 | Sbjct 418 C 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148796436433296