Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_025464.1
Length=44147
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 632 6e-177
>seq11797
Length=28381
Score = 632 bits (700), Expect = 6e-177
Identities = 733/981 (75%), Gaps = 8/981 (1%)
Strand=Plus/Minus
Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783
|| ||| ||||| ||||||| || || ||||||||||| || || |||||||| ||
Sbjct 1400 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1341
Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACC 18842
||||| || | || ||| | || ||| ||| ||||| || || |||||||| ||
Sbjct 1340 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCC 1282
Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902
||| ||||| |||||||| || || || |||||| | || ||||||||| ||||||||
Sbjct 1281 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1222
Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960
|| || || || || | |||| | | ||| || ||||| | || || ||||||
Sbjct 1221 TATTATTTCAGGTGCAATTATTCCTACTTCTGCA--GCTATCGGTTTGCATTTTTACCCA 1164
Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020
|||||||||||| || ||||||||||||| |||||||| || || | |||| |
Sbjct 1163 ATTTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 1104
Query 19021 GTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTAT 19080
|| | ||||| | |||| || | ||| ||||| || |||||||||||||| |
Sbjct 1103 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1044
Query 19081 CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCT 19140
|| | || ||||| ||||||||| |||||| || |||||||||||||| || || ||
Sbjct 1043 CGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 984
Query 19141 GCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGT 19200
|| || ||| | ||||||| |||||||||| |||| || | ||||||| | ||
Sbjct 983 GCAGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 924
Query 19201 ATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCAC 19260
|| |||||| ||||||| |||| |||||||||||||||| |||||||| || ||||||
Sbjct 923 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCAC 864
Query 19261 CCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320
|| || |||||| | ||||| |||||||| |||||||| || ||||||||||| |||||
Sbjct 863 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 804
Query 19321 GGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTA 19379
||||| ||| || | || | ||| | | ||||| || ||| | | |||| || |
Sbjct 803 GGTTC-TTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 745
Query 19380 TGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTT 19439
|| |||| || || ||||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct 744 AGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTT 685
Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499
||| || | || ||||| || || ||||||||| |||||| |||||||||| ||
Sbjct 684 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTT 625
Query 19500 GGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATT 19559
|| |||||||| || || || ||||||||| | || | || | || || ||||||||
Sbjct 624 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATT 565
Query 19560 CAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGA 19619
||||| ||||| || || || ||||| || | |||| | | || ||||| ||| |
Sbjct 564 TAACTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAA 505
Query 19620 TACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAA 19679
|||||||||||| ||| | || ||||||||||| || | || || ||||| ||||||||
Sbjct 504 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 445
Query 19680 TGCTCATAACTTCCCACTTGA 19700
|||||| |||||||| || ||
Sbjct 444 TGCTCACAACTTCCCTCTAGA 424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 141118106487696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |