Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq14499 100 3e-16 seq14413 89.7 5e-13 >seq14499 Length=662897 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | ||||||| |||||||| ||||| ||| | |||||| |||||| Sbjct 224182 AACTAGATGGAGGGTTGACTCCTTTTGAATATTGTAATCGGCTAAGGTACGGCCATCTTC 224241 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||||||| |||| |||| || | ||| || |||||||| || ||||| || || Sbjct 224242 GAGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTG 224301 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || ||| || | | || | || |||| |||||| |||| || | || || Sbjct 224302 GATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTCTCCACCTCGAGAGTAATGGTCTT 224361 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | ||| || ||||| Sbjct 224362 GCCAGTGAGAGTTTTCACGAAGATTTGCAT 224391 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| |||| ||||||| ||||| || ||||| ||| | |||||| |||||| Sbjct 223954 AACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCGGCTAAGGTACGGCCATCTTC 224013 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| ||||| || | |||| || | ||| ||||||||||| || ||||| || || Sbjct 224014 GAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTG 224073 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || ||| ||| | | || | || || | ||| || |||| || | ||||| Sbjct 224074 GATCTTTGCTTTAACATTATCGATGGTGTCTGAGCTCTCAACCTCGAGAGTGATGGTTTT 224133 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||||| ||| || ||||| Sbjct 224134 GCCAGTGAGGGTTTTTACGAAGATTTGCAT 224163 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986 ||||||| ||||| || |||||||| ||| | |||||| |||||| |||||||| ||| Sbjct 223284 TTGACTCCTTTTGTATATTGTAGTCAGCTAA-GGTACGGCCATCTTCAAGCTGTTTTCCG 223342 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTC 132046 | |||| || | || || ||||| || || |||||||| || || || ||| Sbjct 223343 GCGAAGATGAGTCTTTGCTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTAGCTTTT 223402 Query 132047 AACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 | | || | || |||| || ||||| | || | |||||||| || || ||| Sbjct 223403 ACATTATCGATGGTGTCGGAGCTTTCAACTTCTAATGTGATGGTTTTACCGGTTAGGGTT 223462 Query 132107 TTTATGAAAATCTGCAT 132123 || | |||||||||||| Sbjct 223463 TTGACGAAAATCTGCAT 223479 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 || ||||| | | |||| || ||||| ||||||||||| | |||||| || ||| Sbjct 223727 ACTAAATGAAGGGTTGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTACGACCGTCCTCG 223786 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||||||||| | |||| || | ||||||||||| || || |||||||| || | Sbjct 223787 AGCTGTTTACCAGCGAAGATGAGTCTTTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGA 223846 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | || || | ||| ||||| | || | ||||| Sbjct 223847 ATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACTTCTAGGGTGATGGTTTTG 223906 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| | ||| || ||||| Sbjct 223907 CCGGTGAGAGTTTTGACGAAGATTTGCAT 223935 >seq14413 Length=739167 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| ||||||||||| | |||||| |||||| ||||||||||||| | Sbjct 402659 GACTCCTTTTGGATGTTGTAGTCAGCAAGGGTACGGCCATCTTCTAGCTGTTTACCGGCA 402718 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || |||||||| || |||||||| || || || ||| | Sbjct 402719 AAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGGATCTTAGCTTTGACA 402778 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| ||| || || | || | ||||| || || || || ||| Sbjct 402779 TTGTCAATGGTGTCGGAACTCTCAACCTCTAAAGTGATGGTTTTGCCGGTAAGGGTCTTT 402838 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 402839 ACAAAAATTTGCAT 402852 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 ||||| || | | | || || || || ||||||||||| ||| | ||||| ||| || Sbjct 402872 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT-AGAGTACGACCATCCTC 402930 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||||||||| |||| || | ||| || || ||||| || || |||||||| Sbjct 402931 GAGCTGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGGGATACCCTCTTTATCTTG 402990 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || ||| | | || | || || | ||| ||||| | || | ||||| Sbjct 402991 AATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTGATGGTTTT 403050 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| |||||||| | || || ||||| Sbjct 403051 ACCAGTGAGAGTTTTCACAAAGATTTGCAT 403080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||| ||||||||||| | ||| || ||| |||||||||||||||| | Sbjct 403343 GACTCTTTTTGTATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGTTTACCGGCA 403402 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || || || ||||| || || || || || || ||| || | Sbjct 403403 AAGATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTTGCCTTGACA 403462 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||| |||| || | ||||||||||| ||||| || Sbjct 403463 TTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTACCAGTGAGAGTCTTG 403522 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 403523 ACGAAGATTTGCAT 403536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476502103696320