Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq14413 105 6e-18
seq16938 100 3e-16
seq16577 98.7 9e-16
seq14499 95.1 1e-14
seq17130 87.8 2e-12
>seq14413
Length=739167
Score = 105 bits (116), Expect = 6e-18
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233
|||||| | ||||| ||||| | || || ||| | ||||| | ||||| || ||| |
Sbjct 403080 ATGCAAATCTTTGTGAAAACTCTCACTGGTAAAACCATCACCCTAGAAGTTGAGAGCTCA 403021
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|| || || || | || ||| || ||| |||||||||||||| || || || ||
Sbjct 403020 -GACACCATTGACAATGTCAAAGCTAAGATTCAAGATAAAGAGGGTATCCCTCCGGACCA 402962
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACA 25352
||| ||||| || | || ||| ||||| ||||| |||| | | | | | ||| || ||||
Sbjct 402961 GCAGAGACTTATCTTCGCCGGTAAACAGCTCGAGGATGGTCGTACTCT-AGCTGACTACA 402903
Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
| || || || ||||||||| | || || ||| | | |||||||| ||
Sbjct 402902 ACATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTTTGAGAGGTGG 402854
>seq16938
Length=276168
Score = 100 bits (110), Expect = 3e-16
Identities = 110/145 (76%), Gaps = 1/145 (1%)
Strand=Plus/Minus
Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327
|| |||||||||||||| || ||||| || |||||||| | | ||| || ||||| |||
Sbjct 257162 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCCGGTAAGCAACTAGAA 257103
Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387
|||| |||| | ||||||||| || || |||||||| || ||||| |||| ||
Sbjct 257102 GATGGCAGAACACTTGCCGATTACAACATCCAGAAAGAATCTACTCTTCATCTAGTCTTG 257043
Query 25388 AGATTGAGAGGAGGAA-AATGATCA 25411
|| | ||||| |||| |||||||
Sbjct 257042 AGGCTTAGAGGTGGAACCATGATCA 257018
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/145 (74%), Gaps = 1/145 (1%)
Strand=Plus/Plus
Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327
|| |||||||||||||| || ||||| || |||||||| | | || || ||||| |||
Sbjct 249658 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCGGGTAAGCAACTAGAA 249717
Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387
|||| |||| | |||||||| || || ||||| || || ||||| |||| ||
Sbjct 249718 GATGGAAGAACACTTGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTAGTCTTG 249777
Query 25388 AGATTGAGAGGAGGAA-AATGATCA 25411
|| | ||||| |||| |||||||
Sbjct 249778 AGGCTTAGAGGTGGAACCATGATCA 249802
>seq16577
Length=433012
Score = 98.7 bits (108), Expect = 9e-16
Identities = 146/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231
|| ||||| | || || ||||| |||| || ||| |||| || | ||||||||| |
Sbjct 33856 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATAACTCTTGAAGTCGAATCA 33797
Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291
||||| ||||| | || ||| || ||| |||||||| || || || || |||
Sbjct 33796 TCAGATACAATCGACAATGTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCACCGGAT 33737
Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351
|||||| | | |||| || || |||||||||||||| | | | | | | |||||||
Sbjct 33736 CAGCAACGTTTGATTTTCGCTGGAAAACAACTCGAAGACGGTCGTACTCTTGCCGATTAC 33677
Query 25352 AATATTCAAAAAGAATCCACCATTCAT 25378
|| || || || ||||| || |||||
Sbjct 33676 AACATCCAGAAGGAATCGACGCTTCAT 33650
>seq14499
Length=662897
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || ||||| ||||||| ||| | ||||| | ||||| ||| | |
Sbjct 223479 ATGCAGATTTTCGTCAAAACCCTAACCGGTAAAACCATCACATTAGAAGTTGAAAGCTCC 223420
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || ||||| | |||||| || || || ||||| ||||| || || || |||
Sbjct 223419 GACACCATCGATAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 223360
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353
||||||||||| | || ||| ||||| || ||||||| | | | ||| || |||||
Sbjct 223359 CAAAGACTCATCTTCGCCGGAAAACAGCTTGAAGATGGCCG-TACCTTAGCTGACTACAA 223301
Query 25354 TATTCAAAAAGAATCCACCATTCA 25377
||| ||||| || || || ||||
Sbjct 223300 TATACAAAAGGAGTCAACTCTTCA 223277
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233
|||||| | || |||||||| | || || ||| | ||||| |||| || || ||| |
Sbjct 224163 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCA 224104
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|| || ||||| | || ||| ||| || || || || || || || || |||||
Sbjct 224103 -GACACCATCGATAATGTTAAAGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCA 224045
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
||| ||||| || | || ||||||||||||||||||| | | | |||||||||
Sbjct 224044 GCAGAGACTTATCTTCGCAGGCAAACAACTCGAAGATGGCCGTACCTTAGCCGATTACAA 223985
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
||| ||||| || || || | || || || | || || ||||| ||
Sbjct 223984 TATCCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTAAGAGGTGG 223937
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || ||||| | ||||| ||| | ||||| | |||||||| |
Sbjct 223935 ATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTCT 223876
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || || || | || || || ||| || ||||| || || || || |||||
Sbjct 223875 GACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAAGGGATCCCACCAGATCAA 223816
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||||||||||| | || || ||||| ||||| || | | | | | || |||||
Sbjct 223815 CAAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTACAAC 223756
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
|| ||||| ||||| ||| |||||||||| | | || ||||| ||
Sbjct 223755 ATCCAAAAGGAATCAACCCTTCATTTAGTACTTCGTTTAAGAGGTGG 223709
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || ||||| | || || || | || || |||| || || | |
Sbjct 224391 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATTACTCTCGAGGTGGAGAGCTCC 224332
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || ||||| | || || ||| || || || || || || || || || |||
Sbjct 224331 GACACCATCGATAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 224272
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| ||||| || | || ||||||||| |||||||||| | | | ||||||||||
Sbjct 224271 CAGAGACTTATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTAGCCGATTACAAT 224212
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
|||||||| || || ||| | ||| |||| | || ||||| || ||
Sbjct 224211 ATTCAAAAGGAGTCAACCCTCCATCTAGTTCTCAGGTTGAGGGGTGG 224165
>seq17130
Length=165301
Score = 87.8 bits (96), Expect = 2e-12
Identities = 162/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 25169 AACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228
|| || ||||| | || || ||||| | || || ||| | ||||| | || || |||
Sbjct 19899 AAGAAGATGCAGATCTTCGTGAAAACTCTCACGGGGAAAACAATCACCCTTGAGGTTGAA 19840
Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288
| ||||| ||||| | || ||| || || || || || ||||| || ||
Sbjct 19839 TCATCTGATACAATCGACAATGTCAAATCGAAGATCCAAGACAAGGAAGGTATCCCACCG 19780
Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GA 25347
|| |||||| | | |||| || ||| |||||||| ||||| | || | | ||| ||
Sbjct 19779 GACCAGCAACGGTTAATTTTCGCCGGAAAACAACTAGAAGACGGCAGGACATT-AGCTGA 19721
Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402
||||||||| || || ||||| || |||||||||| | | || |||||||||
Sbjct 19720 TTACAATATCCAGAAGGAATCAACTCTTCATTTAGTTCTCCGTTTAAGAGGAGGA 19666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444992517891840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |