Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq14413 105 6e-18 seq16938 100 3e-16 seq16577 98.7 9e-16 seq14499 95.1 1e-14 seq17130 87.8 2e-12 >seq14413 Length=739167 Score = 105 bits (116), Expect = 6e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 |||||| | ||||| ||||| | || || ||| | ||||| | ||||| || ||| | Sbjct 403080 ATGCAAATCTTTGTGAAAACTCTCACTGGTAAAACCATCACCCTAGAAGTTGAGAGCTCA 403021 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| || ||| |||||||||||||| || || || || Sbjct 403020 -GACACCATTGACAATGTCAAAGCTAAGATTCAAGATAAAGAGGGTATCCCTCCGGACCA 402962 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACA 25352 ||| ||||| || | || ||| ||||| ||||| |||| | | | | | ||| || |||| Sbjct 402961 GCAGAGACTTATCTTCGCCGGTAAACAGCTCGAGGATGGTCGTACTCT-AGCTGACTACA 402903 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || || || ||||||||| | || || ||| | | |||||||| || Sbjct 402902 ACATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTTTGAGAGGTGG 402854 >seq16938 Length=276168 Score = 100 bits (110), Expect = 3e-16 Identities = 110/145 (76%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || |||||||||||||| || ||||| || |||||||| | | ||| || ||||| ||| Sbjct 257162 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCCGGTAAGCAACTAGAA 257103 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| |||| | ||||||||| || || |||||||| || ||||| |||| || Sbjct 257102 GATGGCAGAACACTTGCCGATTACAACATCCAGAAAGAATCTACTCTTCATCTAGTCTTG 257043 Query 25388 AGATTGAGAGGAGGAA-AATGATCA 25411 || | ||||| |||| ||||||| Sbjct 257042 AGGCTTAGAGGTGGAACCATGATCA 257018 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || |||||||||||||| || ||||| || |||||||| | | || || ||||| ||| Sbjct 249658 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCGGGTAAGCAACTAGAA 249717 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| |||| | |||||||| || || ||||| || || ||||| |||| || Sbjct 249718 GATGGAAGAACACTTGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTAGTCTTG 249777 Query 25388 AGATTGAGAGGAGGAA-AATGATCA 25411 || | ||||| |||| ||||||| Sbjct 249778 AGGCTTAGAGGTGGAACCATGATCA 249802 >seq16577 Length=433012 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | || || ||||| |||| || ||| |||| || | ||||||||| | Sbjct 33856 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATAACTCTTGAAGTCGAATCA 33797 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||||| ||||| | || ||| || ||| |||||||| || || || || ||| Sbjct 33796 TCAGATACAATCGACAATGTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCACCGGAT 33737 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 |||||| | | |||| || || |||||||||||||| | | | | | | ||||||| Sbjct 33736 CAGCAACGTTTGATTTTCGCTGGAAAACAACTCGAAGACGGTCGTACTCTTGCCGATTAC 33677 Query 25352 AATATTCAAAAAGAATCCACCATTCAT 25378 || || || || ||||| || ||||| Sbjct 33676 AACATCCAGAAGGAATCGACGCTTCAT 33650 >seq14499 Length=662897 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| ||||||| ||| | ||||| | ||||| ||| | | Sbjct 223479 ATGCAGATTTTCGTCAAAACCCTAACCGGTAAAACCATCACATTAGAAGTTGAAAGCTCC 223420 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | |||||| || || || ||||| ||||| || || || ||| Sbjct 223419 GACACCATCGATAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 223360 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 ||||||||||| | || ||| ||||| || ||||||| | | | ||| || ||||| Sbjct 223359 CAAAGACTCATCTTCGCCGGAAAACAGCTTGAAGATGGCCG-TACCTTAGCTGACTACAA 223301 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 ||| ||||| || || || |||| Sbjct 223300 TATACAAAAGGAGTCAACTCTTCA 223277 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 |||||| | || |||||||| | || || ||| | ||||| |||| || || ||| | Sbjct 224163 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCA 224104 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| ||| || || || || || || || || ||||| Sbjct 224103 -GACACCATCGATAATGTTAAAGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCA 224045 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||| || | || ||||||||||||||||||| | | | ||||||||| Sbjct 224044 GCAGAGACTTATCTTCGCAGGCAAACAACTCGAAGATGGCCGTACCTTAGCCGATTACAA 223985 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| ||||| || || || | || || || | || || ||||| || Sbjct 223984 TATCCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTAAGAGGTGG 223937 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||| ||| | ||||| | |||||||| | Sbjct 223935 ATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTCT 223876 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || ||| || ||||| || || || || ||||| Sbjct 223875 GACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAAGGGATCCCACCAGATCAA 223816 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||||||| | || || ||||| ||||| || | | | | | || ||||| Sbjct 223815 CAAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTACAAC 223756 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| ||||| ||| |||||||||| | | || ||||| || Sbjct 223755 ATCCAAAAGGAATCAACCCTTCATTTAGTACTTCGTTTAAGAGGTGG 223709 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || || || | || || |||| || || | | Sbjct 224391 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATTACTCTCGAGGTGGAGAGCTCC 224332 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || ||| || || || || || || || || || ||| Sbjct 224331 GACACCATCGATAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 224272 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||||| || | || ||||||||| |||||||||| | | | |||||||||| Sbjct 224271 CAGAGACTTATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTAGCCGATTACAAT 224212 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| || || ||| | ||| |||| | || ||||| || || Sbjct 224211 ATTCAAAAGGAGTCAACCCTCCATCTAGTTCTCAGGTTGAGGGGTGG 224165 >seq17130 Length=165301 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 25169 AACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 || || ||||| | || || ||||| | || || ||| | ||||| | || || ||| Sbjct 19899 AAGAAGATGCAGATCTTCGTGAAAACTCTCACGGGGAAAACAATCACCCTTGAGGTTGAA 19840 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 | ||||| ||||| | || ||| || || || || || ||||| || || Sbjct 19839 TCATCTGATACAATCGACAATGTCAAATCGAAGATCCAAGACAAGGAAGGTATCCCACCG 19780 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GA 25347 || |||||| | | |||| || ||| |||||||| ||||| | || | | ||| || Sbjct 19779 GACCAGCAACGGTTAATTTTCGCCGGAAAACAACTAGAAGACGGCAGGACATT-AGCTGA 19721 Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 ||||||||| || || ||||| || |||||||||| | | || ||||||||| Sbjct 19720 TTACAATATCCAGAAGGAATCAACTCTTCATTTAGTTCTCCGTTTAAGAGGAGGA 19666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444992517891840