Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq14462 221 2e-51 >seq14462 Length=746139 Score = 221 bits (244), Expect = 2e-51 Identities = 391/564 (69%), Gaps = 17/564 (3%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | ||| ||||| |||||| || ||||||||||| || ||| Sbjct 137365 TGTTCCCGATTCAATACCCACAGATCTGGGAGATGTAC-AAGAAGGCCGAGGCGTCGTTT 137423 Query 1455813 TGGACCGCCGAGGAGGTCGACCT----CGGCGCCGACACGGTCCACTGGGTGTCGCTGAG 1455868 ||||| |||||||| ||||| || | | | ||| || | |||| | | | Sbjct 137424 TGGACTGCCGAGGAAGTCGATCTATCACAGGACGGACGCGAT----TGGGAGAATTTAAA 137479 Query 1455869 CGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCA 1455928 ||||| ||| || || ||||||||||| ||| | ||||| || ||||||| ||||||| Sbjct 137480 CGACGGCGAACGACACTTCATCAAGCATGTCTTAGCCTTCTT-CGCCGCCTCTGATGGCA 137538 Query 1455929 TCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTT 1455988 |||| ||||| || || || || ||| || || || | | ||||| ||| Sbjct 137539 TCGTCTTGGAGAATCTTGCATCTCGATTCATGTCCGATGTTCAGGTATCGGAGGCGCGTG 137598 Query 1455989 TGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGA 1456048 || ||||| || || ||||| || || || || || || || | || || || Sbjct 137599 CTTTCTACGGATTTCAAATCGCGATTGAGAATATTCATTCGGAGATGTATAGTCTACTTC 137658 Query 1456049 TCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGG 1456108 | || |||||| |||||||| || | ||||| ||||||||||| ||||| || Sbjct 137659 TTGATACCTACATCAAGGACAACAAAGAAAGAGACCATCTCTTTCGCGCAATCGAAACAA 137718 Query 1456109 TGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCG 1456168 | |||| || || || || | |||||||||| |||||| || || ||| Sbjct 137719 TCCCGTGTGTTGCCAAGAAAGCGCAATGGGCGATGACTTGGATCGAC-----GGATCTCA 137773 Query 1456169 ACACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 | |||||| ||||| |||| | ||| ||| |||| || || ||||| ||||| || || Sbjct 137774 AACCTTTGCGGAGCGTATCGTAGCCTTCGCCTGCGTTGAAGGTATCTTCTTCTCCGGTAG 137833 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCA 1456287 ||||||| |||| || ||||| || || || || |||||||| || | || ||| || Sbjct 137834 TTTCTGCTCCATTTTCTGGCTTAAAAAACGAGGTCTCATGCCTGGAC-TCACCTTCTCCA 137892 Query 1456288 ACGAATTTATCAGTCGCGACGAAG 1456311 |||| || ||| || ||||||| Sbjct 137893 ACGAGTTAATCTCACGAGACGAAG 137916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176044973942544