Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq16023 134 1e-26 seq16726 107 2e-18 seq12257 107 2e-18 seq14499 100 3e-16 seq14413 100 3e-16 seq16577 86.0 6e-12 >seq16023 Length=121467 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | ||| ||||| || | || |||||| || ||||||||||| || Sbjct 25071 CCACCACGTAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCT 25130 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || |||||||| || ||||| ||||||| ||||||||||| || Sbjct 25131 AGAGTACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGG 25190 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| |||| ||||||| | |||| | | || ||| |||||| Sbjct 25191 ATTCCCTCCTTGTCTTGGATC-TTTGCTTTAACGTTGTCGATGGTATCGGAGCTTTCCAC 25249 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| || || |||||||| ||||| || || || ||||| Sbjct 25250 CTCCAAGGTGATGGTCTTGCCCGTCAAGGTTTTAACGAAGATTTGCAT 25297 Score = 122 bits (134), Expect = 8e-23 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||| || |||||||| ||||| Sbjct 24843 CCACCACGGAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCT 24902 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || ||||| || || || || ||||| | ||||||||||| || Sbjct 24903 AGGGTACGACCGTCCTCGAGCTGTTTGCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGG 24962 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||||||||| ||| ||| || | |||| | | ||||| |||| || Sbjct 24963 ATACCTTCCTTGTCCTGGAT-TTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTC---TC 25018 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| ||||| || || ||||| ||||| |||||||| |||||||| Sbjct 25019 CACCTCCAAAGTGATGGTCTTTCCCGTTAAAGTCTTCACAAAGATCTGCAT 25069 Score = 113 bits (124), Expect = 4e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | | |||||||| | || |||||| || |||||||| ||||| Sbjct 24615 CCACCACGTAGACGAAGGACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCT 24674 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || ||||||||||| || || || | || |||||||||| || Sbjct 24675 AAAGTGCGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGTTGCTGGTCCGGTGGG 24734 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||| |||||| ||| ||| |||| | |||| | | ||||| |||| || Sbjct 24735 ATTCCCTCTTTGTCCTGGAT-TTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTC---TC 24790 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 24791 AACCTCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATCTGCAT 24841 Score = 113 bits (124), Expect = 4e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | ||||| || | ||| ||| || || |||||||| || ||| Sbjct 25299 CCACCACGAAGCCTGAGGACCAAGTGGAGCGTCGACTCTTTCTGGATGTTGTAGTCAGCC 25358 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| || || || ||||| || || ||||||| ||||||||||| ||| Sbjct 25359 AAGGTACGGCCGTCCTCGAGTTGTTTACCAGCGAAGATCAACCTCTGCTGGTCCGGAGGG 25418 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||||| ||| |||| || |||| |||| | | ||||| |||| || Sbjct 25419 ATACCTTCCTTATCCTGGATC-TTGGCTTTGACGTTGTCGATGGTGTCGGAGCTC---TC 25474 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| || ||||| || ||||| | ||||| || || || ||||| Sbjct 25475 AACCTCCAAGGTAATCGTCTTGCCCGTTAGGGTTTTGACGAAGATTTGCAT 25525 Score = 109 bits (120), Expect = 5e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || || | ||| || | || || |||||||| || || || Sbjct 24422 CTCCTTTTGAATGTTGTAGTCAGCGAGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 24481 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| ||| | | ||||||||| |||||| ||||| || Sbjct 24482 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 24540 Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | | ||||| |||| ||||| || | || || || ||||| ||||| || | Sbjct 24541 TGTCTATGGTGTCAGAGCTC---TCCACTTCGAGGGTAATGGTCTTACCGGTCAAGGTCT 24597 Query 35721 TCACAAATATCTGCAT 35736 | ||||| |||||||| Sbjct 24598 TAACAAAAATCTGCAT 24613 >seq16726 Length=336357 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| || || || || || | || || |||||||| || || || Sbjct 61306 CTCCTTCTGGATATTGTAGTCAGCTAAAGTGCGTCCATCCTCGAGCTGCTTTCCGGCGAA 61247 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||||| |||| | ||||||||| |||||| ||| | | | Sbjct 61246 AATCAATCGCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 61187 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| ||||| ||||| | ||||| || || ||||| | |||||||| Sbjct 61186 GTCGATGGTGTCAGAGGATTCGACCTCGAGAGTGATAGTCTTCCCCGTTAGGGTTTTCAC 61127 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 61126 GAAGATCTGCAT 61115 >seq12257 Length=1143886 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| ||||| || ||||||||||| || | |||| |||| ||| Sbjct 1016211 ACCAAGTGAAGCGTTGATTCCTTCTGGATGTTGTAATCCGCGAGAGTTCTACCGTCCTCC 1016270 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | ||||| || || || |||||||| ||||| |||| || | || ||||||||| | Sbjct 1016271 AATTGCTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGGATGCCTTCCTTGTCCTGG 1016330 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| |||| | | | | ||| || ||||| ||||| | ||||| || || Sbjct 1016331 ATCTTGGCTTTCACATTATCGATCGTATCAGAGGATTCAACCTCTAGGGTGATTGTCTTC 1016390 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | |||||||| || |||||||| Sbjct 1016391 CCCGTTAGGGTTTTCACGAAAATCTGCAT 1016419 >seq14499 Length=662897 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||| ||||||||||| ||||| || | || || ||||| || || || || Sbjct 224200 CTCCTTTTGAATATTGTAATCGGCTAAGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAA 224259 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | | ||||||||| | ||||| | |||||||| ||||||| ||| | | | Sbjct 224260 GATAAGTCTCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATT 224319 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| |||||||| | || || || || || || | |||||| Sbjct 224320 ATCGATGGTGTCGGAGCTC---TCCACCTCGAGAGTAATGGTCTTGCCAGTGAGAGTTTT 224376 Query 35722 CACAAATATCTGCAT 35736 ||| || || ||||| Sbjct 224377 CACGAAGATTTGCAT 224391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | |||||| | ||||| |||| || ||||||||| || ||||||||||| Sbjct 223937 CCACCTCTTAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCGGCT 223996 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || || || || || || || || | | |||||| || | |||| Sbjct 223997 AAGGTACGGCCATCTTCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGAGGA 224056 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||||| ||||||| || | | | | | ||||| |||| || Sbjct 224057 ATTCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCGATGGTGTCTGAGCTC---TCA 224113 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| ||||| || || | ||||| || || || ||||| Sbjct 224114 ACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 224163 >seq14413 Length=739167 Score = 100 bits (110), Expect = 3e-16 Identities = 149/209 (71%), Gaps = 7/209 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| || || | || || | || || ||||| ||||| ||||| Sbjct 404162 CTCCTTTTGGATGTTGTAGTCTGCAAGAGTACGTCCATCCTCGAGCTGTTTACCGGCAAA 404221 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | | ||||||||||| ||||| | |||||||||| |||||| ||| | | | Sbjct 404222 GATTAGTCTCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 404281 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| || ||||| | ||||| || || || || | ||||| Sbjct 404282 ATCGATGGTGTCTGAGCTC---TCTACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTT 404338 Query 35722 CACAAATATCTGCATTCTGTGCGCACACA 35750 ||| || || |||| ||||| ||| ||| Sbjct 404339 CACGAAGATTTGCA-TCTGTAAGCAAACA 404366 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||||||||| || | ||| || | || || ||||| || || ||||| Sbjct 402434 TCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAG 402493 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || |||||||||| ||||| | ||||||||| ||||| || | | | Sbjct 402494 ATCAAACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAATCTTAGCTTTTACATTG 402553 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| |||| || || || | ||||| ||||| || || | || || Sbjct 402554 TCAATGGTGTCTGAGCTC---TCAACTTCTAGAGTGATGGTTTTGCCGGTAAGGGTCTTT 402610 Query 35723 ACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 402611 ACAAAAATCTGCAT 402624 >seq16577 Length=433012 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | | || | ||| | ||| ||||| || |||||||||||||| Sbjct 33627 CCACCACGTAGACGAAGAACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCA 33686 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || || || || || || || ||||| || ||||| |||| ||| Sbjct 33687 AGAGTACGACCGTCTTCGAGTTGTTTTCCAGCGAAAATCAAACGTTGCTGATCCGGTGGA 33746 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || || ||| ||||| || | | | | | || || ||||| || Sbjct 33747 ATTCCTTCTTTATCCTGAATCTTGGCTTTGACATTGTCGATTGTATCTGATGATTCGACT 33806 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || |||||||||||||| | |||||||| || |||||||| Sbjct 33807 TCAAGAGTTATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 33853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450690413344960