Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_026923.1
Length=179110
Score E
Sequences producing significant alignments: (Bits) Value
seq17927 619 1e-172
seq11797 605 3e-168
seq14836 111 2e-19
>seq17927
Length=56337
Score = 619 bits (686), Expect = 1e-172
Identities = 751/1017 (74%), Gaps = 8/1017 (1%)
Strand=Plus/Plus
Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438
|||||| | ||||||||||| | | || ||||| || ||||| |||||||||||
Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063
Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498
|| | || |||| ||| ||| | || | || |||||| | || || || || |||
Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123
Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTC 159558
| || ||||| || || || | || |||||||| | |||||| |||||| |
Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 4183
Query 159559 ACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 159618
|| || || || || || |||||| || | | | ||||| | | |||| ||||||
Sbjct 4184 ACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGT 4243
Query 159619 CCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTT 159678
||||| | ||||| || || || ||||| ||| | || || | ||| | ||||||
Sbjct 4244 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 4303
Query 159679 GCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG- 159737
||||||||||| || ||||| | |||||||||||| |||| ||||||||| |||||||
Sbjct 4304 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 4363
Query 159738 TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 159797
||| ||| | || ||||| ||||| || || ||||||||||| ||||||||||||||
Sbjct 4364 TCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 4422
Query 159798 CAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGG 159857
|| ||||| || |||||||| ||||| ||| ||||||||||| |||||||| ||
Sbjct 4423 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 4482
Query 159858 GGTAGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCT 159914
||||| || || ||| ||| |||| || |||| ||||||| || || ||||| |
Sbjct 4483 TGTAGCGGCTATTTTTCGATTTATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATT 4539
Query 159915 CAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAAT 159974
||||| || |||||||||||||| || ||| |||| || | || ||| | || || ||
Sbjct 4540 GAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTAT 4599
Query 159975 CCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAA 160034
||||||||||||||||| || || || ||||||||||| || ||||| |||||
Sbjct 4600 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 4659
Query 160035 GGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 160094
|| ||| | || ||||||| ||||| |||||||| |||||||| || |||||||| ||
Sbjct 4660 TGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 4719
Query 160095 GTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 160154
||| || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| ||
Sbjct 4720 GTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 4779
Query 160155 TGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCT 160214
||| || || | ||| |||||| || |||| | | ||||| ||||| |||||
Sbjct 4780 TGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCT 4839
Query 160215 TCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGAC 160274
|| || || || || || ||||| || | ||||| |||||||| |||||||||||
Sbjct 4840 ACGCGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGAC 4899
Query 160275 CTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGA 160334
|||||||| || || || || || || ||||| |||||||||||||||| || ||
Sbjct 4900 TTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 4959
Query 160335 TCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391
||| || ||||||||| |||| ||||||||||| || ||||| | || ||||| ||
Sbjct 4960 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016
>seq11797
Length=28381
Score = 605 bits (670), Expect = 3e-168
Identities = 738/1004 (74%), Gaps = 2/1004 (0%)
Strand=Plus/Minus
Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734
|||||| | ||| ||||| || | |||||| | || |||| ||||| ||||| |
Sbjct 1401 CTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1342
Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCC 157794
|||||| ||||| || | | |||||| | ||| || |||| || | ||||||||
Sbjct 1341 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCC 1282
Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854
|| || || ||||| || || || ||||| ||| |||| || || | || || |||||
Sbjct 1281 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1222
Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914
|| || || |||||| || |||||| ||| || |||||| | || || ||||| ||
Sbjct 1221 TATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAAT 1162
Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974
|||||||| ||||| |||| || ||||| || ||||||||||||| |||| | ||
Sbjct 1161 TTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 1102
Query 157975 ATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCG 158034
| ||||| | | || | | |||||||| |||||||||||||| || |||
Sbjct 1101 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1042
Query 158035 TTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGC 158094
||| |||||||| || ||||| ||| |||||||| ||||| || || || || | |||
Sbjct 1041 TTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 982
Query 158095 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158154
||| ||| | |||||||| | |||||||| || || |||| ||||||||| || ||
Sbjct 981 AGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 922
Query 158155 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158214
|||||||||||| |||| |||| |||||||||| || || || ||||| |||||||||||
Sbjct 921 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCC 862
Query 158215 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274
|| || ||| | ||||| ||||| |||||||| || || || || ||||||||||||
Sbjct 861 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 802
Query 158275 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 158333
| | || ||||| | | | || | ||||| || |||| || || || | |
Sbjct 801 TTCTTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 743
Query 158334 GTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCG 158393
|||| | ||||||||||||||||| || |||||||| || || || ||||| || || |
Sbjct 742 GTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTG 683
Query 158394 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158453
| || |||||||||||||| ||| |||||||| || ||||| || || |||||| | |
Sbjct 682 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 623
Query 158454 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 158513
| || ||||| || || || || ||||| || || | || | || |||||||| |
Sbjct 622 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTA 563
Query 158514 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158573
|| | || || ||||| |||||||| || | ||||| |||| || ||||| | || |
Sbjct 562 ACTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAATA 503
Query 158574 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158633
| ||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| |
Sbjct 502 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 443
Query 158634 CACACAACTTCCCACTGGATCTTGCTGCTGCTGAGTCTACACCT 158677
| ||||||||||| || || || |||| || |||| || || ||
Sbjct 442 CTCACAACTTCCCTCTAGACCTAGCTGTTGTTGAGGCTCCATCT 399
>seq14836
Length=433140
Score = 111 bits (122), Expect = 2e-19
Identities = 153/209 (73%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 158823 ATTCAGTGTGAGTCCGATCAGTACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATT 158882
||| | ||||| |||| ||| |||| |||||||| ||||| || ||| |||| ||
Sbjct 174397 ATTGAATGTGATGACGATGTCTACGTTCTTGACGCTGCTGAAGAAGCTGGAATTGAC-TT 174455
Query 158883 AACTAT-TCCTGTCGTGCTGGTGCCTGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGAAC 158941
|| | || || ||| ||||| | ||||| ||||||||||||| |||| || |
Sbjct 174456 GCCTTTCTCTTGCCGTTCTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCTGGTAA 174515
Query 158942 TGTTGACCAAAGCGATCAGTCA-TTCTTGGATGATGATCAGATTGCAGAAGGATTTATCC 159000
| ||||||| | ||| | ||| ||| | |||||||||||||| || | || | | |||
Sbjct 174516 TATTGACCAGACAGAT-AATCAGTTCCTTGATGATGATCAGATGGCTGCTGGCTATGTCC 174574
Query 159001 TTACGTGTGTATCTTATCCCACTTCTGAT 159029
| || |||||| |||| || |||||||||
Sbjct 174575 TCACTTGTGTAGCTTACCCTACTTCTGAT 174603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572892834806400
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