Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq11797 569 2e-157 seq17927 500 1e-136 >seq11797 Length=28381 Score = 569 bits (630), Expect = 2e-157 Identities = 708/967 (73%), Gaps = 2/967 (0%) Strand=Plus/Minus Query 159987 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 160046 ||||| || || | || ||||| || || ||||||| || || | ||| | ||||| Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1314 Query 160047 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 160106 | ||| || |||| || | |||||||| || || || || || || || |||||| Sbjct 1313 TCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1254 Query 160107 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 160166 || || |||| || || | || || ||||| || || || |||||| || |||| || Sbjct 1253 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTACT 1194 Query 160167 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 160226 || || || ||| | || || || || || |||||||| ||||| ||||||| ||| Sbjct 1193 TCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGG 1134 Query 160227 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCA 160286 || || ||||||||||||| |||| | || | ||||| | | || | | Sbjct 1133 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1074 Query 160287 TATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 160346 |||||||| ||||||||||||||| | |||||| |||||||| || ||||| ||| Sbjct 1073 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 1014 Query 160347 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAA 160406 |||||||| ||||| || || || || |||| || ||| | | |||||| | |||||| Sbjct 1013 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCAA 954 Query 160407 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 160466 || || || |||| ||||||||| || |||||||||||||| |||| |||| ||||| Sbjct 953 GGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTA 894 Query 160467 TTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTA 160526 ||||| || || || || || |||||||| || || |||||| | || || ||||| ||| Sbjct 893 TTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 834 Query 160527 TTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-G 160585 ||||| || || | || ||||||||| || | | || ||||| | | | || | Sbjct 833 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTC-TAGTTTGATCAG 775 Query 160586 TGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGAC 160645 ||||| || |||| || || || | ||||| | ||||||||||| ||||| || Sbjct 774 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 715 Query 160646 CTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATT 160705 |||||||| || || || |||||||| || || || ||||||||||||||||| || Sbjct 714 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 655 Query 160706 CAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTT 160765 |||||| || ||||| | || |||||| | || || ||||| ||||| || || ||||| Sbjct 654 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 595 Query 160766 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 160825 |||||| | ||| |||| || |||||||| ||| | || || ||||| |||||||| || Sbjct 594 TACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATC 535 Query 160826 CATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGG 160885 | | ||| ||||||| ||||| | || || ||||| || | | || |||||| Sbjct 534 TGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 475 Query 160886 TCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGC 160945 ||||||||||||||||||||||| ||||| || ||||||||||| || ||||| |||| Sbjct 474 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGT 415 Query 160946 TGCTGAG 160952 || |||| Sbjct 414 TGTTGAG 408 >seq17927 Length=56337 Score = 500 bits (554), Expect = 1e-136 Identities = 724/1019 (71%), Gaps = 2/1019 (0%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||| ||| ||||| | || |||||| | || || ||||| || Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 161867 | ||| |||||||| ||||| | || ||||||||| | || ||| || ||| | Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 4183 Query 161868 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 161926 || || | ||| ||||| ||| | | | | ||||| || || || || ||||| Sbjct 4184 ACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTC-GTTGTTGTTACTGTGGGG 4242 Query 161927 TCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGT 161986 |||||| || ||||| ||||| || ||| ||| | || || || |||| |||||| Sbjct 4243 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 4302 Query 161987 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 162046 || ||||| || || ||||| |||| || || ||| | ||||| |||||||| || || Sbjct 4303 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 4362 Query 162047 TCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 162106 | || | || || || ||||| || || ||||||||||| |||||||||||||| Sbjct 4363 ATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 4422 Query 162107 CAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGG 162166 |||||||| || || ||| | ||||| || ||||||| || || || ||||| Sbjct 4423 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 4482 Query 162167 GGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAA 162226 || || || || ||| |||| | | ||| | ||||| || ||||| ||||| |||| Sbjct 4483 TGTAGCGGCTATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 4542 Query 162227 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCA 162286 ||| || |||||||||||||| || ||| |||| || | || || |||| |||||||| Sbjct 4543 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 4602 Query 162287 CGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGC 162346 || | || || |||||||| |||| || ||||| || ||||| || || || Sbjct 4603 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 4662 Query 162347 GTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 162406 ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||||| Sbjct 4663 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 4722 Query 162407 GCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 162466 || ||||| || |||| ||||| || || || ||| | ||||| || ||||| ||||| Sbjct 4723 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 4782 Query 162467 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCG 162526 || || | ||| |||||| || |||| | | ||||| ||| | ||||| || Sbjct 4783 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 4842 Query 162527 TGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTT 162586 || || || || || ||||| ||| | ||||| |||||||| || ||||| || || Sbjct 4843 CGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 4902 Query 162587 CTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCA 162646 ||||||||| || ||||| | || ||||| | ||||| ||| | || || || || Sbjct 4903 CTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 4962 Query 162647 ACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 || ||||| ||| |||| ||||| || || ||||| || | || ||||| ||||||| Sbjct 4963 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 5021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559375929534400