Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_026924.1
Length=174885
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 569 2e-157
seq17927 500 1e-136
>seq11797
Length=28381
Score = 569 bits (630), Expect = 2e-157
Identities = 708/967 (73%), Gaps = 2/967 (0%)
Strand=Plus/Minus
Query 159987 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 160046
||||| || || | || ||||| || || ||||||| || || | ||| | |||||
Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1314
Query 160047 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 160106
| ||| || |||| || | |||||||| || || || || || || || ||||||
Sbjct 1313 TCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1254
Query 160107 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 160166
|| || |||| || || | || || ||||| || || || |||||| || |||| ||
Sbjct 1253 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTACT 1194
Query 160167 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 160226
|| || || ||| | || || || || || |||||||| ||||| ||||||| |||
Sbjct 1193 TCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGG 1134
Query 160227 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCA 160286
|| || ||||||||||||| |||| | || | ||||| | | || | |
Sbjct 1133 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1074
Query 160287 TATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 160346
|||||||| ||||||||||||||| | |||||| |||||||| || ||||| |||
Sbjct 1073 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 1014
Query 160347 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAA 160406
|||||||| ||||| || || || || |||| || ||| | | |||||| | ||||||
Sbjct 1013 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCAA 954
Query 160407 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 160466
|| || || |||| ||||||||| || |||||||||||||| |||| |||| |||||
Sbjct 953 GGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTA 894
Query 160467 TTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTA 160526
||||| || || || || || |||||||| || || |||||| | || || ||||| |||
Sbjct 893 TTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 834
Query 160527 TTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-G 160585
||||| || || | || ||||||||| || | | || ||||| | | | || |
Sbjct 833 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTC-TAGTTTGATCAG 775
Query 160586 TGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGAC 160645
||||| || |||| || || || | ||||| | ||||||||||| ||||| ||
Sbjct 774 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 715
Query 160646 CTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATT 160705
|||||||| || || || |||||||| || || || ||||||||||||||||| ||
Sbjct 714 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 655
Query 160706 CAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTT 160765
|||||| || ||||| | || |||||| | || || ||||| ||||| || || |||||
Sbjct 654 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 595
Query 160766 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 160825
|||||| | ||| |||| || |||||||| ||| | || || ||||| |||||||| ||
Sbjct 594 TACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATC 535
Query 160826 CATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGG 160885
| | ||| ||||||| ||||| | || || ||||| || | | || ||||||
Sbjct 534 TGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 475
Query 160886 TCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGC 160945
||||||||||||||||||||||| ||||| || ||||||||||| || ||||| ||||
Sbjct 474 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGT 415
Query 160946 TGCTGAG 160952
|| ||||
Sbjct 414 TGTTGAG 408
>seq17927
Length=56337
Score = 500 bits (554), Expect = 1e-136
Identities = 724/1019 (71%), Gaps = 2/1019 (0%)
Strand=Plus/Plus
Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747
||||| || | || |||||| | |||| || ||||||||||| || ||||||||
Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063
Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807
|| | || |||| ||| ||| ||||| | || |||||| | || || ||||| ||
Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123
Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 161867
| ||| |||||||| ||||| | || ||||||||| | || ||| || ||| |
Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 4183
Query 161868 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 161926
|| || | ||| ||||| ||| | | | | ||||| || || || || |||||
Sbjct 4184 ACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTC-GTTGTTGTTACTGTGGGG 4242
Query 161927 TCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGT 161986
|||||| || ||||| ||||| || ||| ||| | || || || |||| ||||||
Sbjct 4243 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 4302
Query 161987 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 162046
|| ||||| || || ||||| |||| || || ||| | ||||| |||||||| || ||
Sbjct 4303 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 4362
Query 162047 TCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 162106
| || | || || || ||||| || || ||||||||||| ||||||||||||||
Sbjct 4363 ATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 4422
Query 162107 CAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGG 162166
|||||||| || || ||| | ||||| || ||||||| || || || |||||
Sbjct 4423 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 4482
Query 162167 GGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAA 162226
|| || || || ||| |||| | | ||| | ||||| || ||||| ||||| ||||
Sbjct 4483 TGTAGCGGCTATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 4542
Query 162227 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCA 162286
||| || |||||||||||||| || ||| |||| || | || || |||| ||||||||
Sbjct 4543 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 4602
Query 162287 CGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGC 162346
|| | || || |||||||| |||| || ||||| || ||||| || || ||
Sbjct 4603 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 4662
Query 162347 GTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 162406
||| | | || || | ||||| |||||||| |||||||| || |||||||| |||||
Sbjct 4663 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 4722
Query 162407 GCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 162466
|| ||||| || |||| ||||| || || || ||| | ||||| || ||||| |||||
Sbjct 4723 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 4782
Query 162467 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCG 162526
|| || | ||| |||||| || |||| | | ||||| ||| | ||||| ||
Sbjct 4783 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 4842
Query 162527 TGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTT 162586
|| || || || || ||||| ||| | ||||| |||||||| || ||||| || ||
Sbjct 4843 CGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 4902
Query 162587 CTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCA 162646
||||||||| || ||||| | || ||||| | ||||| ||| | || || || ||
Sbjct 4903 CTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 4962
Query 162647 ACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705
|| ||||| ||| |||| ||||| || || ||||| || | || ||||| |||||||
Sbjct 4963 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 5021
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 559375929534400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |