Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq11797 565 3e-156 seq17927 517 1e-141 seq12403 129 7e-25 seq14836 98.7 1e-15 >seq11797 Length=28381 Score = 565 bits (626), Expect = 3e-156 Identities = 699/956 (73%), Gaps = 0/956 (0%) Strand=Plus/Minus Query 181008 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 181067 ||||| || || | || ||||| || || ||||||| || || | ||| | |||||| Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1314 Query 181068 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 181127 | ||| || |||| || | |||||||| || || || || || || || |||||| Sbjct 1313 TCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1254 Query 181128 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 181187 || || |||| || || | || || ||||| || || || |||||| || |||| || Sbjct 1253 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTACT 1194 Query 181188 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 181247 || || || ||| | || || || || || |||||||| ||||| ||||||| ||| Sbjct 1193 TCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGG 1134 Query 181248 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATTTATGCA 181307 || || ||||||||||||| |||| | || | ||||| | | || | | Sbjct 1133 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1074 Query 181308 TACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTT 181367 || ||||| ||||| |||||||| || ||| || |||||||| || ||||| |||| Sbjct 1073 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 1014 Query 181368 GCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAA 181427 ||||| || ||||| || ||||| || |||| || ||| | |||||||| | |||||| Sbjct 1013 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCAA 954 Query 181428 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 181487 || || ||||| | ||||| || || ||||||||||| ||||||| |||| |||| Sbjct 953 GGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTA 894 Query 181488 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTA 181547 ||||| || ||||| |||||||| ||||| || || |||||||| ||||| || |||||| Sbjct 893 TTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 834 Query 181548 TTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGT 181607 || || || || || || ||||| ||||| ||||||||||| || ||| | || | Sbjct 833 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGG 774 Query 181608 GAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACA 181667 || || || |||| ||| || || | ||||||| ||||| ||||||||||| || Sbjct 773 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 714 Query 181668 TACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTC 181727 |||||||| || || || || ||||| ||||| || |||||||||||||||||| ||| Sbjct 713 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTC 654 Query 181728 AACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTC 181787 ||||| || ||||| | || |||||| | || || ||||| ||||| || || ||||| Sbjct 653 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 594 Query 181788 ACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCT 181847 || || | || | || || |||||||||||| | ||||||||||| |||||||| ||| Sbjct 593 ACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATCT 534 Query 181848 ATCCTCGACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGT 181907 | | || | ||||| ||||| | || || ||||| || | | |||||||| Sbjct 533 GTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 474 Query 181908 CTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGC 181963 || || |||||||| ||||| || || || || ||||||||||| || || || || Sbjct 473 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 418 >seq17927 Length=56337 Score = 517 bits (572), Expect = 1e-141 Identities = 722/1007 (72%), Gaps = 8/1007 (1%) Strand=Plus/Plus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | |||| ||||| || ||||| ||||||||||| || | || Sbjct 4014 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 4073 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||| ||| |||| | || |||||| | || || ||| | ||||| || | Sbjct 4074 TTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 4133 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 182550 |||| || || || | || ||||||| | |||||| || ||| | || || || | Sbjct 4134 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGG 4193 Query 182551 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 182610 | || || |||||| || | | | ||||| | | |||| ||||||||||| | | Sbjct 4194 TTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCAC 4253 Query 182611 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 182670 | || |||| || ||||| ||| | || || || |||| ||| || |||||||||| Sbjct 4254 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACG 4313 Query 182671 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGA 182729 | || ||||| | || ||||| ||| | | ||||||||||||||||| ||| || | Sbjct 4314 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAA 4372 Query 182730 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTC 182789 | ||||||| ||||| || || || |||||||| |||||||| || || ||| ||| Sbjct 4373 TTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTC 4432 Query 182790 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 182849 || || ||||| | || || || |||||| || ||||| |||||||| ||||| Sbjct 4433 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 4492 Query 182850 ATCTTCAGGT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTC 182906 || || | | |||| || |||| ||||||| || || |||||| | ||||| || Sbjct 4493 ATTTTTCGATTTATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTT 4549 Query 182907 CATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTC 182966 |||||||||||||| || ||| ||||||| | || ||||| | ||||| ||||||| Sbjct 4550 CATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCT 4609 Query 182967 ACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGAT 183026 || ||||| ||||| || | ||||||||| || ||||| ||||| || || | Sbjct 4610 ACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAAC 4669 Query 183027 TCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATC 183086 | ||||| | || || || ||||| ||||| || || || || ||||||||||||||| Sbjct 4670 CCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATC 4729 Query 183087 TTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTC 183146 || |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || Sbjct 4730 TTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTA 4789 Query 183147 ATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTAT 183206 | ||| | ||| | | || |||| | | || || ||| | || || || || ||| Sbjct 4790 ACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTAT 4849 Query 183207 GATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACA 183266 || ||||| || || || | ||||| |||||||| || || ||||| |||||||| Sbjct 4850 GACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACT 4909 Query 183267 AAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACAT 183326 || || || ||| | || ||||| | ||||||||| |||| || ||||| || ||| Sbjct 4910 AAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCAT 4969 Query 183327 GAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 |||||| | || |||||||| || |||||||| | || ||||| || Sbjct 4970 GAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016 >seq12403 Length=479826 Score = 129 bits (142), Expect = 7e-25 Identities = 152/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 179463 ATGTGAGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTA 179522 |||||| |||||| ||| | ||||| || ||||||||||| ||| | ||| | ||| Sbjct 152747 ATGTGATGATGATGTTTATGTTCTTGATGCAGCTGAAGAAGCTGGTCTTGATTTGCCTTA 152688 Query 179523 CTCTTGTCGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGA 179582 ||| || ||||||||| |||||||| |||||| || ||| ||| | |||||||||||| Sbjct 152687 CTCGTGCCGTGCTGGTTCTTGTTCAAGTTGTGCAGGGAAAGTAGTGGCTGGATCTGTTGA 152628 Query 179583 TCAAAGCGATCAATCGTTTTTGGATGACGATCAAATGGAGT-CGGGATTTATTCTGACTT 179641 |||| ||||| ||||| || || || || || |||| |||| | |||| |||| Sbjct 152627 TCAATCAGATCAGAGTTTTTTAGAAGATGAACAGAT-GAGTGAAGGATATGTTCTTACTT 152569 Query 179642 GCGTATCTTATCCTACTAGTGAT 179664 | ||| | ||||| ||| |||| Sbjct 152568 GTGTAGCGTATCCAACTTCTGAT 152546 >seq14836 Length=433140 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 179463 ATGTGAGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTA 179522 |||||| || ||| || | |||||||||||||||||||| || | || | || Sbjct 174402 ATGTGATGACGATGTCTACGTTCTTGACGCTGCTGAAGAAGCTGGAATTGACTTGCCTTT 174461 Query 179523 CTCTTGTCGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGA 179582 |||||| ||| ||||| |||||||| |||||||||||| | | | ||| | |||| Sbjct 174462 CTCTTGCCGTTCTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCTGGTAATATTGA 174521 Query 179583 TCAAAGCGATCAATC-GTTTTTGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTT 179641 || | ||| |||| ||| | ||||| ||||| |||| | || | | | || |||| Sbjct 174522 CCAGACAGAT-AATCAGTTCCTTGATGATGATCAGATGGCTGCTGGCTATGTCCTCACTT 174580 Query 179642 GCGTATCTTATCCTACTAGTGAT 179664 | ||| |||| |||||| |||| Sbjct 174581 GTGTAGCTTACCCTACTTCTGAT 174603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614476914031360