Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_026926.1
Length=192108
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 565 3e-156
seq17927 517 1e-141
seq12403 129 7e-25
seq14836 98.7 1e-15
>seq11797
Length=28381
Score = 565 bits (626), Expect = 3e-156
Identities = 699/956 (73%), Gaps = 0/956 (0%)
Strand=Plus/Minus
Query 181008 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 181067
||||| || || | || ||||| || || ||||||| || || | ||| | ||||||
Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1314
Query 181068 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 181127
| ||| || |||| || | |||||||| || || || || || || || ||||||
Sbjct 1313 TCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1254
Query 181128 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 181187
|| || |||| || || | || || ||||| || || || |||||| || |||| ||
Sbjct 1253 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTACT 1194
Query 181188 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 181247
|| || || ||| | || || || || || |||||||| ||||| ||||||| |||
Sbjct 1193 TCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGG 1134
Query 181248 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATTTATGCA 181307
|| || ||||||||||||| |||| | || | ||||| | | || | |
Sbjct 1133 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1074
Query 181308 TACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTT 181367
|| ||||| ||||| |||||||| || ||| || |||||||| || ||||| ||||
Sbjct 1073 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 1014
Query 181368 GCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAA 181427
||||| || ||||| || ||||| || |||| || ||| | |||||||| | ||||||
Sbjct 1013 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCAA 954
Query 181428 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 181487
|| || ||||| | ||||| || || ||||||||||| ||||||| |||| ||||
Sbjct 953 GGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTA 894
Query 181488 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTA 181547
||||| || ||||| |||||||| ||||| || || |||||||| ||||| || ||||||
Sbjct 893 TTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 834
Query 181548 TTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGT 181607
|| || || || || || ||||| ||||| ||||||||||| || ||| | || |
Sbjct 833 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGG 774
Query 181608 GAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACA 181667
|| || || |||| ||| || || | ||||||| ||||| ||||||||||| ||
Sbjct 773 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 714
Query 181668 TACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTC 181727
|||||||| || || || || ||||| ||||| || |||||||||||||||||| |||
Sbjct 713 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTC 654
Query 181728 AACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTC 181787
||||| || ||||| | || |||||| | || || ||||| ||||| || || |||||
Sbjct 653 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 594
Query 181788 ACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCT 181847
|| || | || | || || |||||||||||| | ||||||||||| |||||||| |||
Sbjct 593 ACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATCT 534
Query 181848 ATCCTCGACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGT 181907
| | || | ||||| ||||| | || || ||||| || | | ||||||||
Sbjct 533 GTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 474
Query 181908 CTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGC 181963
|| || |||||||| ||||| || || || || ||||||||||| || || || ||
Sbjct 473 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 418
>seq17927
Length=56337
Score = 517 bits (572), Expect = 1e-141
Identities = 722/1007 (72%), Gaps = 8/1007 (1%)
Strand=Plus/Plus
Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430
|||| |||||| | |||| ||||| || ||||| ||||||||||| || | ||
Sbjct 4014 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 4073
Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490
|||| ||| ||| |||| | || |||||| | || || ||| | ||||| || |
Sbjct 4074 TTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 4133
Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 182550
|||| || || || | || ||||||| | |||||| || ||| | || || || |
Sbjct 4134 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGG 4193
Query 182551 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 182610
| || || |||||| || | | | ||||| | | |||| ||||||||||| | |
Sbjct 4194 TTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCAC 4253
Query 182611 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 182670
| || |||| || ||||| ||| | || || || |||| ||| || ||||||||||
Sbjct 4254 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACG 4313
Query 182671 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGA 182729
| || ||||| | || ||||| ||| | | ||||||||||||||||| ||| || |
Sbjct 4314 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAA 4372
Query 182730 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTC 182789
| ||||||| ||||| || || || |||||||| |||||||| || || ||| |||
Sbjct 4373 TTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTC 4432
Query 182790 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 182849
|| || ||||| | || || || |||||| || ||||| |||||||| |||||
Sbjct 4433 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 4492
Query 182850 ATCTTCAGGT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTC 182906
|| || | | |||| || |||| ||||||| || || |||||| | ||||| ||
Sbjct 4493 ATTTTTCGATTTATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTT 4549
Query 182907 CATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTC 182966
|||||||||||||| || ||| ||||||| | || ||||| | ||||| |||||||
Sbjct 4550 CATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCT 4609
Query 182967 ACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGAT 183026
|| ||||| ||||| || | ||||||||| || ||||| ||||| || || |
Sbjct 4610 ACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAAC 4669
Query 183027 TCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATC 183086
| ||||| | || || || ||||| ||||| || || || || |||||||||||||||
Sbjct 4670 CCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATC 4729
Query 183087 TTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTC 183146
|| |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || ||
Sbjct 4730 TTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTA 4789
Query 183147 ATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTAT 183206
| ||| | ||| | | || |||| | | || || ||| | || || || || |||
Sbjct 4790 ACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTAT 4849
Query 183207 GATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACA 183266
|| ||||| || || || | ||||| |||||||| || || ||||| ||||||||
Sbjct 4850 GACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACT 4909
Query 183267 AAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACAT 183326
|| || || ||| | || ||||| | ||||||||| |||| || ||||| || |||
Sbjct 4910 AAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCAT 4969
Query 183327 GAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373
|||||| | || |||||||| || |||||||| | || ||||| ||
Sbjct 4970 GAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016
>seq12403
Length=479826
Score = 129 bits (142), Expect = 7e-25
Identities = 152/203 (75%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 179463 ATGTGAGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTA 179522
|||||| |||||| ||| | ||||| || ||||||||||| ||| | ||| | |||
Sbjct 152747 ATGTGATGATGATGTTTATGTTCTTGATGCAGCTGAAGAAGCTGGTCTTGATTTGCCTTA 152688
Query 179523 CTCTTGTCGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGA 179582
||| || ||||||||| |||||||| |||||| || ||| ||| | ||||||||||||
Sbjct 152687 CTCGTGCCGTGCTGGTTCTTGTTCAAGTTGTGCAGGGAAAGTAGTGGCTGGATCTGTTGA 152628
Query 179583 TCAAAGCGATCAATCGTTTTTGGATGACGATCAAATGGAGT-CGGGATTTATTCTGACTT 179641
|||| ||||| ||||| || || || || || |||| |||| | |||| ||||
Sbjct 152627 TCAATCAGATCAGAGTTTTTTAGAAGATGAACAGAT-GAGTGAAGGATATGTTCTTACTT 152569
Query 179642 GCGTATCTTATCCTACTAGTGAT 179664
| ||| | ||||| ||| ||||
Sbjct 152568 GTGTAGCGTATCCAACTTCTGAT 152546
>seq14836
Length=433140
Score = 98.7 bits (108), Expect = 1e-15
Identities = 145/203 (71%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 179463 ATGTGAGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTA 179522
|||||| || ||| || | |||||||||||||||||||| || | || | ||
Sbjct 174402 ATGTGATGACGATGTCTACGTTCTTGACGCTGCTGAAGAAGCTGGAATTGACTTGCCTTT 174461
Query 179523 CTCTTGTCGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGA 179582
|||||| ||| ||||| |||||||| |||||||||||| | | | ||| | ||||
Sbjct 174462 CTCTTGCCGTTCTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCTGGTAATATTGA 174521
Query 179583 TCAAAGCGATCAATC-GTTTTTGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTT 179641
|| | ||| |||| ||| | ||||| ||||| |||| | || | | | || ||||
Sbjct 174522 CCAGACAGAT-AATCAGTTCCTTGATGATGATCAGATGGCTGCTGGCTATGTCCTCACTT 174580
Query 179642 GCGTATCTTATCCTACTAGTGAT 179664
| ||| |||| |||||| ||||
Sbjct 174581 GTGTAGCTTACCCTACTTCTGAT 174603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 614476914031360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |