Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq11797 580 1e-160 seq17927 477 1e-129 seq12403 118 1e-21 seq14836 107 2e-18 >seq11797 Length=28381 Score = 580 bits (642), Expect = 1e-160 Identities = 702/956 (73%), Gaps = 0/956 (0%) Strand=Plus/Minus Query 177876 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177935 ||||| || || | || ||||| || || ||||||| || || | ||| | |||||| Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1314 Query 177936 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 177995 | ||| || |||| || | |||||||| || || || || || || || |||||| Sbjct 1313 TCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1254 Query 177996 CCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCT 178055 || || |||| || || | || || ||||| || || || |||||| || |||| || Sbjct 1253 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTACT 1194 Query 178056 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 178115 || || || ||| | || || || || || |||||||| ||||| ||||||| ||| Sbjct 1193 TCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGG 1134 Query 178116 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCA 178175 || || ||||||||||||| |||| | || | ||||| | ||||| | | Sbjct 1133 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1074 Query 178176 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 178235 || ||||| ||||||||||||||| | |||||| |||||||| || ||||| ||| Sbjct 1073 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 1014 Query 178236 GCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAA 178295 ||||| || ||||| || ||||| || | ||||| ||| || |||||||| | |||||| Sbjct 1013 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCAA 954 Query 178296 GGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 178355 || |||||||| | ||||| || || ||||||||||| ||||||| |||| |||| Sbjct 953 GGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTA 894 Query 178356 TTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTA 178415 ||||| || || || |||||||| |||||||| || |||||||| ||||| || |||||| Sbjct 893 TTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 834 Query 178416 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGT 178475 ||||| || || || || ||||| ||||| ||||||||||| || ||| | | | Sbjct 833 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGG 774 Query 178476 GAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACA 178535 ||||| || |||| ||||| || | ||||| | ||||| ||||||||||| || Sbjct 773 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 714 Query 178536 TACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTC 178595 |||||||| || || || ||||| || || || || |||||||||||||||||| ||| Sbjct 713 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTC 654 Query 178596 AACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTC 178655 ||||| || ||||| | || |||||| | || || ||||| ||||| || || ||||| Sbjct 653 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 594 Query 178656 ACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCC 178715 || || | || | || || |||||||||||| | ||||||||||| |||||||| || Sbjct 593 ACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATCT 534 Query 178716 ATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGT 178775 | | || | ||||| ||||| | || || ||||| || | | |||||||| Sbjct 533 GTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 474 Query 178776 CTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGC 178831 || || |||||||| ||||| || || || || ||||||||||| || || || || Sbjct 473 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 418 >seq17927 Length=56337 Score = 477 bits (528), Expect = 1e-129 Identities = 708/1001 (71%), Gaps = 2/1001 (0%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| ||||| || ||||| ||||||||||| || | || Sbjct 4014 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 4073 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| ||| |||| | || |||||| | || || ||| | ||||| || | Sbjct 4074 TTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 4133 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTG 179412 |||| || || || | || ||||||||| | || ||| || ||| | || || || | Sbjct 4134 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGG 4193 Query 179413 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179472 | || || |||||| || | | | ||||| | | |||| ||||||||||| | | Sbjct 4194 TTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCAC 4253 Query 179473 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 179532 | || |||| || ||||| ||| | || || || |||| ||| || |||||||||| Sbjct 4254 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACG 4313 Query 179533 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGT 179591 | || ||||| | || ||||| ||| | | ||||||||||||||||| ||| | | Sbjct 4314 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 4373 Query 179592 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTC 179651 | ||||||| ||||| || || || |||||||| |||||||| || || ||| ||| Sbjct 4374 TGC-GACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTC 4432 Query 179652 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 179711 || || ||||| | || || || |||||| || ||||| |||||||| ||||| Sbjct 4433 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 4492 Query 179712 ATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCAT 179771 || || | || | || || | || || || || || ||||| | ||||| || ||| Sbjct 4493 ATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 4552 Query 179772 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACT 179831 ||||||||||| || ||| |||| || | || ||||| | ||||| ||||| | |||| Sbjct 4553 ATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACT 4612 Query 179832 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCG 179891 ||||| ||||| || | ||||||||| || |||||||| || || ||| | | Sbjct 4613 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 4672 Query 179892 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 179951 || || | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| Sbjct 4673 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 4732 Query 179952 GGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 180011 || |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 4733 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACT 4792 Query 180012 GGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGAT 180071 ||| |||||| || |||| | | ||||| ||| | ||||| || || || || Sbjct 4793 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGAC 4852 Query 180072 TTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAG 180131 || || ||||| ||| | ||||| |||||||| || |||||||| |||||||| || Sbjct 4853 TTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAAA 4912 Query 180132 AACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAG 180191 || |||||| | || ||||| | ||||| ||| |||| | ||||| || ||||| Sbjct 4913 AATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 4972 Query 180192 TCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 | ||||||| || || ||||| ||| | || || || Sbjct 4973 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 5013 >seq12403 Length=479826 Score = 118 bits (130), Expect = 1e-21 Identities = 150/205 (73%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 176330 ATGTGAGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTA 176389 |||||| |||||| ||| | ||||| || ||||||||||| ||| | ||| | ||| Sbjct 152747 ATGTGATGATGATGTTTATGTTCTTGATGCAGCTGAAGAAGCTGGTCTTGATTTGCCTTA 152688 Query 176390 CTCTTGTCGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGA 176449 ||| || ||||||||| |||||||| |||||| || ||| ||| | ||| |||||||| Sbjct 152687 CTCGTGCCGTGCTGGTTCTTGTTCAAGTTGTGCAGGGAAAGTAGTGGCTGGATCTGTTGA 152628 Query 176450 TCAGAGTGATCAGTCTTTCCTGGATGATGATCAAAT---TGAATCTGGTTTTATTCTGAC 176506 ||| |||||| ||| | || ||||| || || |||| || | | |||| || Sbjct 152627 TCAATCAGATCAGAGTTTTTTAGAAGATGAACAGATGAGTGAA---GGATATGTTCTTAC 152571 Query 176507 TTGCGTATCTTATCCTACTAGTGAT 176531 ||| ||| | ||||| ||| |||| Sbjct 152570 TTGTGTAGCGTATCCAACTTCTGAT 152546 >seq14836 Length=433140 Score = 107 bits (118), Expect = 2e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 176330 ATGTGAGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTA 176389 |||||| || ||| || | |||||||||||||||||||| || | || | || Sbjct 174402 ATGTGATGACGATGTCTACGTTCTTGACGCTGCTGAAGAAGCTGGAATTGACTTGCCTTT 174461 Query 176390 CTCTTGTCGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGA 176449 |||||| ||| ||||| |||||||| |||||||| ||| | | | |||| | |||| Sbjct 174462 CTCTTGCCGTTCTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCTGGTAATATTGA 174521 Query 176450 TCAGAGTGATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTG 176509 |||| ||| | ||||| ||||||||||| || | |||| | | | || ||||| Sbjct 174522 CCAGACAGATAATCAGTTCCTTGATGATGATCAGATGGCTGCTGGCTATGTCCTCACTTG 174581 Query 176510 CGTATCTTATCCTACTAGTGAT 176531 ||| |||| |||||| |||| Sbjct 174582 TGTAGCTTACCCTACTTCTGAT 174603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605870884402560